miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
235 5' -65.9 AC_000008.1 + 28058 0.66 0.169692
Target:  5'- cUGCCGCGCGagACCUAGCC-GCGaaCCu -3'
miRNA:   3'- -ACGGCGCGUg-UGGGUCGGgCGCc-GGu -5'
235 5' -65.9 AC_000008.1 + 19892 0.7 0.076903
Target:  5'- gGCCGCGUuugugcGCGCCCcagGGCgCGCGGUa- -3'
miRNA:   3'- aCGGCGCG------UGUGGG---UCGgGCGCCGgu -5'
235 5' -65.9 AC_000008.1 + 23200 0.72 0.056459
Target:  5'- cUGCUGCGCGCGCUCAcgcuGCgCCaCGGCCu -3'
miRNA:   3'- -ACGGCGCGUGUGGGU----CG-GGcGCCGGu -5'
235 5' -65.9 AC_000008.1 + 12087 1.07 0.000066
Target:  5'- gUGCCGCGCACACCCAGCCCGCGGCCAu -3'
miRNA:   3'- -ACGGCGCGUGUGGGUCGGGCGCCGGU- -5'
235 5' -65.9 AC_000008.1 + 29304 0.66 0.156694
Target:  5'- -uUCGaCGCGCGCCUgcuGCCCGgGGUCu -3'
miRNA:   3'- acGGC-GCGUGUGGGu--CGGGCgCCGGu -5'
235 5' -65.9 AC_000008.1 + 29540 0.66 0.152565
Target:  5'- cGuuGCGCGCGaauacgUgCAGCUaaacauCGCGGCCAa -3'
miRNA:   3'- aCggCGCGUGU------GgGUCGG------GCGCCGGU- -5'
235 5' -65.9 AC_000008.1 + 18607 0.67 0.133368
Target:  5'- gGCCGCaGCGacCGCCU-GCaCCGCGGCa- -3'
miRNA:   3'- aCGGCG-CGU--GUGGGuCG-GGCGCCGgu -5'
235 5' -65.9 AC_000008.1 + 27366 0.67 0.129806
Target:  5'- cGCCGCGCgguaccguagucGCGCCgCGGggaUGCGGCCu -3'
miRNA:   3'- aCGGCGCG------------UGUGG-GUCgg-GCGCCGGu -5'
235 5' -65.9 AC_000008.1 + 23848 0.68 0.110219
Target:  5'- aGCuCGCGguCGCUgAGCUCGCGccGCCGg -3'
miRNA:   3'- aCG-GCGCguGUGGgUCGGGCGC--CGGU- -5'
235 5' -65.9 AC_000008.1 + 19626 0.7 0.07908
Target:  5'- gGCC-CGCAUGgCC-GCCCGuCGGCCGg -3'
miRNA:   3'- aCGGcGCGUGUgGGuCGGGC-GCCGGU- -5'
235 5' -65.9 AC_000008.1 + 18733 0.68 0.104329
Target:  5'- gGUC-UGCACGCCCAGUCC-CGGCg- -3'
miRNA:   3'- aCGGcGCGUGUGGGUCGGGcGCCGgu -5'
235 5' -65.9 AC_000008.1 + 19680 0.68 0.110219
Target:  5'- cGCCGCGCGuugggcggcagUGCCgGGUCgGCGGCg- -3'
miRNA:   3'- aCGGCGCGU-----------GUGGgUCGGgCGCCGgu -5'
235 5' -65.9 AC_000008.1 + 26143 0.66 0.169692
Target:  5'- cGCCGCcCGCugCC-GCCCGCcacGGUg- -3'
miRNA:   3'- aCGGCGcGUGugGGuCGGGCG---CCGgu -5'
235 5' -65.9 AC_000008.1 + 19762 0.69 0.098736
Target:  5'- cGCCGggcucCGCGCACCaCGGUCUGaauGGCCGc -3'
miRNA:   3'- aCGGC-----GCGUGUGG-GUCGGGCg--CCGGU- -5'
235 5' -65.9 AC_000008.1 + 25073 0.66 0.165256
Target:  5'- cGCUGCGCGCGgCCAGU----GGCCAa -3'
miRNA:   3'- aCGGCGCGUGUgGGUCGggcgCCGGU- -5'
235 5' -65.9 AC_000008.1 + 22725 0.68 0.116419
Target:  5'- cUGcCCGUGUccuccuGC-CCCAGCgCGCGGCUg -3'
miRNA:   3'- -AC-GGCGCG------UGuGGGUCGgGCGCCGGu -5'
235 5' -65.9 AC_000008.1 + 16977 0.7 0.081315
Target:  5'- gUGgCGCGgGCAaacugcaCCAGCCCGgGGCuCAg -3'
miRNA:   3'- -ACgGCGCgUGUg------GGUCGGGCgCCG-GU- -5'
235 5' -65.9 AC_000008.1 + 23683 0.71 0.065001
Target:  5'- uUGCCaGCGCGCGCgggugccaccgCCAGCCCaggucCGGCCc -3'
miRNA:   3'- -ACGG-CGCGUGUG-----------GGUCGGGc----GCCGGu -5'
235 5' -65.9 AC_000008.1 + 29483 0.66 0.165256
Target:  5'- uUGgCGCGUGCACCUgguGCCCGaCGaGCgCAc -3'
miRNA:   3'- -ACgGCGCGUGUGGGu--CGGGC-GC-CG-GU- -5'
235 5' -65.9 AC_000008.1 + 20699 0.67 0.133368
Target:  5'- gGCCucaGCGCGCuucuCCuCAGCCCGUguGGCa- -3'
miRNA:   3'- aCGG---CGCGUGu---GG-GUCGGGCG--CCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.