miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23500 5' -53.5 NC_005259.1 + 53020 0.66 0.891512
Target:  5'- cGCuGCGGUGGcgUCGa-GGCAUCGUgaccucGCGGg -3'
miRNA:   3'- -CG-CGCCACU--AGUggCUGUAGUA------CGCC- -5'
23500 5' -53.5 NC_005259.1 + 59400 0.66 0.884297
Target:  5'- cGCGCGagcGUGAccUCGCgcaUGGCGUCG-GCGGc -3'
miRNA:   3'- -CGCGC---CACU--AGUG---GCUGUAGUaCGCC- -5'
23500 5' -53.5 NC_005259.1 + 50412 0.66 0.876832
Target:  5'- cGCGcCGGUGccuUgACCGGC-UCgggcagcgGUGCGGg -3'
miRNA:   3'- -CGC-GCCACu--AgUGGCUGuAG--------UACGCC- -5'
23500 5' -53.5 NC_005259.1 + 41772 0.66 0.876832
Target:  5'- uGCGCGaacaaCACCGGCAUCG-GCGa -3'
miRNA:   3'- -CGCGCcacuaGUGGCUGUAGUaCGCc -5'
23500 5' -53.5 NC_005259.1 + 29996 0.66 0.868339
Target:  5'- cGCaCGGUGGUCACCacGACAagGUgaccaccgccgggGCGGu -3'
miRNA:   3'- -CGcGCCACUAGUGG--CUGUagUA-------------CGCC- -5'
23500 5' -53.5 NC_005259.1 + 28009 0.66 0.861176
Target:  5'- gGgGCGG-GGUCGCCGGgGUUgcGCGc -3'
miRNA:   3'- -CgCGCCaCUAGUGGCUgUAGuaCGCc -5'
23500 5' -53.5 NC_005259.1 + 39010 0.66 0.861176
Target:  5'- aGCGCGGUGAcCAgacCCGAgAUCcguuccUGCGc -3'
miRNA:   3'- -CGCGCCACUaGU---GGCUgUAGu-----ACGCc -5'
23500 5' -53.5 NC_005259.1 + 11037 0.66 0.861176
Target:  5'- uCGCcgGGUGGUCACCG-CAUgaCGUGCc- -3'
miRNA:   3'- cGCG--CCACUAGUGGCuGUA--GUACGcc -5'
23500 5' -53.5 NC_005259.1 + 41881 0.67 0.852998
Target:  5'- cCGUGGcGG--GCCGAUAcgCAUGCGGg -3'
miRNA:   3'- cGCGCCaCUagUGGCUGUa-GUACGCC- -5'
23500 5' -53.5 NC_005259.1 + 32878 0.67 0.852998
Target:  5'- cGCGCGGUGAucgauUCACCGGgGgCGaggGUGa -3'
miRNA:   3'- -CGCGCCACU-----AGUGGCUgUaGUa--CGCc -5'
23500 5' -53.5 NC_005259.1 + 45194 0.67 0.852998
Target:  5'- aGCGCGGUGAUgACgGGCGaguucGCGu -3'
miRNA:   3'- -CGCGCCACUAgUGgCUGUagua-CGCc -5'
23500 5' -53.5 NC_005259.1 + 60228 0.67 0.844597
Target:  5'- -gGCGcUGAgcUCGCUGGCAcgcuugCGUGCGGg -3'
miRNA:   3'- cgCGCcACU--AGUGGCUGUa-----GUACGCC- -5'
23500 5' -53.5 NC_005259.1 + 20547 0.67 0.839451
Target:  5'- aGCGUGGUGGaucagCACCGACcccgagAUCAUcgaggcauacgaccgGUGGa -3'
miRNA:   3'- -CGCGCCACUa----GUGGCUG------UAGUA---------------CGCC- -5'
23500 5' -53.5 NC_005259.1 + 50245 0.67 0.835979
Target:  5'- gGCGCGGaucgUGGccaacgggcuacUCGCUGuCGUCGgugGCGGg -3'
miRNA:   3'- -CGCGCC----ACU------------AGUGGCuGUAGUa--CGCC- -5'
23500 5' -53.5 NC_005259.1 + 57321 0.67 0.818131
Target:  5'- -gGCGGUG-UCGgUGugGUCAUGUGc -3'
miRNA:   3'- cgCGCCACuAGUgGCugUAGUACGCc -5'
23500 5' -53.5 NC_005259.1 + 21634 0.68 0.808919
Target:  5'- cGCGCGGagUGuUCGCCGAgGcUCucGCGGa -3'
miRNA:   3'- -CGCGCC--ACuAGUGGCUgU-AGuaCGCC- -5'
23500 5' -53.5 NC_005259.1 + 5087 0.68 0.789968
Target:  5'- gGC-CGGUG-UCACCGGCgAUC-UGCGu -3'
miRNA:   3'- -CGcGCCACuAGUGGCUG-UAGuACGCc -5'
23500 5' -53.5 NC_005259.1 + 67784 0.68 0.780248
Target:  5'- aCGCGGUGAccUUGuuGGCAccgCGUGCGa -3'
miRNA:   3'- cGCGCCACU--AGUggCUGUa--GUACGCc -5'
23500 5' -53.5 NC_005259.1 + 36531 0.69 0.750242
Target:  5'- cGCGCGGUGugaCACgCGGgGUgAucUGCGGu -3'
miRNA:   3'- -CGCGCCACua-GUG-GCUgUAgU--ACGCC- -5'
23500 5' -53.5 NC_005259.1 + 8228 0.69 0.750242
Target:  5'- cGUGCGGUGGU-GCCGACAcCcUGCc- -3'
miRNA:   3'- -CGCGCCACUAgUGGCUGUaGuACGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.