miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23504 3' -56 NC_005259.1 + 60072 0.66 0.747367
Target:  5'- -aGGCuCGGGcgGC-UCgccgacuuucucgauGGCGAGCUCGACc -3'
miRNA:   3'- uaCUG-GCCU--UGuAG---------------CCGCUCGAGCUG- -5'
23504 3' -56 NC_005259.1 + 50282 0.66 0.743257
Target:  5'- gGUGGCgGGAACGUCGuGCacGCUCuGCc -3'
miRNA:   3'- -UACUGgCCUUGUAGC-CGcuCGAGcUG- -5'
23504 3' -56 NC_005259.1 + 24474 0.66 0.737058
Target:  5'- -cGACCGGAgaGCucguccUCGGCGAugucaagaccaccaaGgUCGACa -3'
miRNA:   3'- uaCUGGCCU--UGu-----AGCCGCU---------------CgAGCUG- -5'
23504 3' -56 NC_005259.1 + 43578 0.66 0.732905
Target:  5'- gAUGACCuuGAGCAgcacUCGGaCGAGCaagUUGACg -3'
miRNA:   3'- -UACUGGc-CUUGU----AGCC-GCUCG---AGCUG- -5'
23504 3' -56 NC_005259.1 + 8770 0.66 0.722456
Target:  5'- uUGGCCaGcGCggCGGUgauGAGCUCGGCc -3'
miRNA:   3'- uACUGGcCuUGuaGCCG---CUCGAGCUG- -5'
23504 3' -56 NC_005259.1 + 56308 0.66 0.722456
Target:  5'- cGUGGCCGGAcccuCGUCGccguCGAGCaaucCGACu -3'
miRNA:   3'- -UACUGGCCUu---GUAGCc---GCUCGa---GCUG- -5'
23504 3' -56 NC_005259.1 + 40884 0.66 0.711919
Target:  5'- --cACCGGccACcgUGGCGGGgUCGGCa -3'
miRNA:   3'- uacUGGCCu-UGuaGCCGCUCgAGCUG- -5'
23504 3' -56 NC_005259.1 + 8973 0.66 0.711919
Target:  5'- cGUG-CCGGGACGUaGGUGccAGCggCGACg -3'
miRNA:   3'- -UACuGGCCUUGUAgCCGC--UCGa-GCUG- -5'
23504 3' -56 NC_005259.1 + 48473 0.66 0.711919
Target:  5'- --cGCCGGGucGCGUCGGCcuguucCUCGACg -3'
miRNA:   3'- uacUGGCCU--UGUAGCCGcuc---GAGCUG- -5'
23504 3' -56 NC_005259.1 + 9564 0.66 0.701306
Target:  5'- -cGACC---GCGUCGGCGAgguGCUCGuCa -3'
miRNA:   3'- uaCUGGccuUGUAGCCGCU---CGAGCuG- -5'
23504 3' -56 NC_005259.1 + 67788 0.66 0.690627
Target:  5'- gGUGACCuuguuGGcACcgCGuGCGAGCUUGAg -3'
miRNA:   3'- -UACUGG-----CCuUGuaGC-CGCUCGAGCUg -5'
23504 3' -56 NC_005259.1 + 39454 0.66 0.690627
Target:  5'- -gGACCGGAGaaaacUGGCGAGCcgUCGuCg -3'
miRNA:   3'- uaCUGGCCUUgua--GCCGCUCG--AGCuG- -5'
23504 3' -56 NC_005259.1 + 5954 0.66 0.690627
Target:  5'- -cGAgCGGGACuUCuGCGGGC-CGACc -3'
miRNA:   3'- uaCUgGCCUUGuAGcCGCUCGaGCUG- -5'
23504 3' -56 NC_005259.1 + 58969 0.67 0.669116
Target:  5'- -aGGUCGGGcagcucgucgGCGaCGGCGAGCUUGGCc -3'
miRNA:   3'- uaCUGGCCU----------UGUaGCCGCUCGAGCUG- -5'
23504 3' -56 NC_005259.1 + 63657 0.67 0.658305
Target:  5'- cUGGCCGGGACGcCGGacaccuCGGGCacCGGCg -3'
miRNA:   3'- uACUGGCCUUGUaGCC------GCUCGa-GCUG- -5'
23504 3' -56 NC_005259.1 + 31794 0.67 0.636622
Target:  5'- uUGACCGcguCGUCauCGAGCUCGACc -3'
miRNA:   3'- uACUGGCcuuGUAGccGCUCGAGCUG- -5'
23504 3' -56 NC_005259.1 + 34174 0.67 0.636622
Target:  5'- aGUG-CCGGAACAcaccgGGCaguGGCUCGGCa -3'
miRNA:   3'- -UACuGGCCUUGUag---CCGc--UCGAGCUG- -5'
23504 3' -56 NC_005259.1 + 36002 0.67 0.636622
Target:  5'- -aGGCCGGAcuGCAcCGagguggccaGCGAGgUCGACa -3'
miRNA:   3'- uaCUGGCCU--UGUaGC---------CGCUCgAGCUG- -5'
23504 3' -56 NC_005259.1 + 61914 0.67 0.636622
Target:  5'- --cGCCGGucguCGUCGGC-AGCUCGGu -3'
miRNA:   3'- uacUGGCCuu--GUAGCCGcUCGAGCUg -5'
23504 3' -56 NC_005259.1 + 12369 0.68 0.625769
Target:  5'- -cGACCGaGGuaGUCGGCGAGagCGGCa -3'
miRNA:   3'- uaCUGGC-CUugUAGCCGCUCgaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.