Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23506 | 5' | -52.8 | NC_005259.1 | + | 53540 | 0.69 | 0.729882 |
Target: 5'- cUCGGUG-CCcgGuguCGGCUCGGGCg -3' miRNA: 3'- aGGCCACuGGuaCuucGUUGAGUCCG- -5' |
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23506 | 5' | -52.8 | NC_005259.1 | + | 15464 | 0.69 | 0.729882 |
Target: 5'- cCCGuUGGCCAaGgcGCAACUCucgcuGGCc -3' miRNA: 3'- aGGCcACUGGUaCuuCGUUGAGu----CCG- -5' |
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23506 | 5' | -52.8 | NC_005259.1 | + | 56501 | 0.69 | 0.719215 |
Target: 5'- -aCGGUGGCgAUGAuucc-CUCAGGCa -3' miRNA: 3'- agGCCACUGgUACUucguuGAGUCCG- -5' |
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23506 | 5' | -52.8 | NC_005259.1 | + | 60596 | 0.7 | 0.697632 |
Target: 5'- gUCgGGUG-CCGUcaucGAGCAGCaCAGGCg -3' miRNA: 3'- -AGgCCACuGGUAc---UUCGUUGaGUCCG- -5' |
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23506 | 5' | -52.8 | NC_005259.1 | + | 6553 | 0.7 | 0.697632 |
Target: 5'- -gCGGUGaaGCUGUGcgcGGCGugUCAGGCc -3' miRNA: 3'- agGCCAC--UGGUACu--UCGUugAGUCCG- -5' |
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23506 | 5' | -52.8 | NC_005259.1 | + | 27383 | 0.7 | 0.696545 |
Target: 5'- -aCGGUGACCGgcggcGGugucggcagcggcGGCAGCUCGGuGCc -3' miRNA: 3'- agGCCACUGGUa----CU-------------UCGUUGAGUC-CG- -5' |
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23506 | 5' | -52.8 | NC_005259.1 | + | 26817 | 0.7 | 0.686738 |
Target: 5'- gCCGGUaccGGCgGUGGugccggGGCGgucuGCUCGGGCa -3' miRNA: 3'- aGGCCA---CUGgUACU------UCGU----UGAGUCCG- -5' |
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23506 | 5' | -52.8 | NC_005259.1 | + | 51160 | 0.7 | 0.65158 |
Target: 5'- uUCgGGuUGACCGUGGcgAGCcacagaucgauCUCAGGCa -3' miRNA: 3'- -AGgCC-ACUGGUACU--UCGuu---------GAGUCCG- -5' |
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23506 | 5' | -52.8 | NC_005259.1 | + | 41391 | 0.71 | 0.598595 |
Target: 5'- gCCGGUacCCAUGgcGCGccGCUCGGGg -3' miRNA: 3'- aGGCCAcuGGUACuuCGU--UGAGUCCg -5' |
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23506 | 5' | -52.8 | NC_005259.1 | + | 59152 | 0.72 | 0.533387 |
Target: 5'- -gCGGUG-CCggGGAGCuGCUCAGGg -3' miRNA: 3'- agGCCACuGGuaCUUCGuUGAGUCCg -5' |
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23506 | 5' | -52.8 | NC_005259.1 | + | 50415 | 0.73 | 0.481056 |
Target: 5'- gCCGGUG-CCuUGAc-CGGCUCGGGCa -3' miRNA: 3'- aGGCCACuGGuACUucGUUGAGUCCG- -5' |
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23506 | 5' | -52.8 | NC_005259.1 | + | 45646 | 0.74 | 0.450879 |
Target: 5'- gCCGGUGccGCCGUGAAcaccgccguccGCGuaguaccgccuGCUCAGGCc -3' miRNA: 3'- aGGCCAC--UGGUACUU-----------CGU-----------UGAGUCCG- -5' |
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23506 | 5' | -52.8 | NC_005259.1 | + | 29613 | 0.75 | 0.393822 |
Target: 5'- aUCCGGUGgcauuACCAucgcUGucAGCAACUCuGGCg -3' miRNA: 3'- -AGGCCAC-----UGGU----ACu-UCGUUGAGuCCG- -5' |
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23506 | 5' | -52.8 | NC_005259.1 | + | 7870 | 0.77 | 0.309752 |
Target: 5'- cCCGGUGGCCc-GAGuGCuugGACUCGGGCa -3' miRNA: 3'- aGGCCACUGGuaCUU-CG---UUGAGUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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