miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23507 5' -55.1 NC_005259.1 + 60509 0.66 0.786617
Target:  5'- cGGUGUugucguaguGCGCCAUggcCGG-GCCGggacGCAGCc -3'
miRNA:   3'- aCCACG---------UGUGGUA---GUCaCGGC----UGUCG- -5'
23507 5' -55.1 NC_005259.1 + 6335 0.66 0.786617
Target:  5'- cGG-GCACACCcacgacggGGUGCCGuACGuGCg -3'
miRNA:   3'- aCCaCGUGUGGuag-----UCACGGC-UGU-CG- -5'
23507 5' -55.1 NC_005259.1 + 28622 0.66 0.786617
Target:  5'- aUGGccaagGCcaAgGCCAcCGGUGCCGACAccGCc -3'
miRNA:   3'- -ACCa----CG--UgUGGUaGUCACGGCUGU--CG- -5'
23507 5' -55.1 NC_005259.1 + 56221 0.66 0.776746
Target:  5'- cGGUGUAUGCCAgucgUCGccGCCGACcacguugggaucGGCg -3'
miRNA:   3'- aCCACGUGUGGU----AGUcaCGGCUG------------UCG- -5'
23507 5' -55.1 NC_005259.1 + 35679 0.66 0.776746
Target:  5'- gUGGUGCACAgCGacgCcGUGCC--CGGCg -3'
miRNA:   3'- -ACCACGUGUgGUa--GuCACGGcuGUCG- -5'
23507 5' -55.1 NC_005259.1 + 5706 0.66 0.776746
Target:  5'- -cGUGC-CGCCAaggcCAGcGCCGgACGGCg -3'
miRNA:   3'- acCACGuGUGGUa---GUCaCGGC-UGUCG- -5'
23507 5' -55.1 NC_005259.1 + 9416 0.66 0.766728
Target:  5'- gGGUGCgccACACCGU---UGUCGAgCAGCc -3'
miRNA:   3'- aCCACG---UGUGGUAgucACGGCU-GUCG- -5'
23507 5' -55.1 NC_005259.1 + 53733 0.66 0.766728
Target:  5'- aUGGUGauguCGCCGgguguccacUCGGUGCCGccgaACAGg -3'
miRNA:   3'- -ACCACgu--GUGGU---------AGUCACGGC----UGUCg -5'
23507 5' -55.1 NC_005259.1 + 26962 0.66 0.766728
Target:  5'- -cGUGCGCAgCG-CcGUGCCGAacuCGGCg -3'
miRNA:   3'- acCACGUGUgGUaGuCACGGCU---GUCG- -5'
23507 5' -55.1 NC_005259.1 + 846 0.66 0.766728
Target:  5'- aGGU-CGCugCG-CAG-GCCGAguGCg -3'
miRNA:   3'- aCCAcGUGugGUaGUCaCGGCUguCG- -5'
23507 5' -55.1 NC_005259.1 + 30194 0.66 0.766728
Target:  5'- ---aGCACuaccCCGUCGGUGCCcGCcGCg -3'
miRNA:   3'- accaCGUGu---GGUAGUCACGGcUGuCG- -5'
23507 5' -55.1 NC_005259.1 + 40549 0.66 0.765718
Target:  5'- gUGGUagucgacGCGCGCCcgcgCGGUGUugcuguCGGCGGCu -3'
miRNA:   3'- -ACCA-------CGUGUGGua--GUCACG------GCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 40137 0.66 0.76065
Target:  5'- cGGgcgaGCuCGCCGUCGGUugucggugcccgccCCGGCAGCu -3'
miRNA:   3'- aCCa---CGuGUGGUAGUCAc-------------GGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 13095 0.66 0.756572
Target:  5'- cGGUGC-CACCGacccCGGcccGCuCGGCGGCu -3'
miRNA:   3'- aCCACGuGUGGUa---GUCa--CG-GCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 22885 0.66 0.756572
Target:  5'- cGGUcgcGCGCugCGUCuGUa-CGACGGCa -3'
miRNA:   3'- aCCA---CGUGugGUAGuCAcgGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 47156 0.66 0.750418
Target:  5'- -cGUGCGCagcagaucACCGUagcggcgaaggucggCGGUGCCGuCGGCg -3'
miRNA:   3'- acCACGUG--------UGGUA---------------GUCACGGCuGUCG- -5'
23507 5' -55.1 NC_005259.1 + 48201 0.66 0.746292
Target:  5'- cGG-GCAUGCCGUCguAGUGguacgaCCGAUAGUc -3'
miRNA:   3'- aCCaCGUGUGGUAG--UCAC------GGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 52011 0.66 0.746292
Target:  5'- cGGaUGCACGagCGUCAGgccGCCGcACuGCg -3'
miRNA:   3'- aCC-ACGUGUg-GUAGUCa--CGGC-UGuCG- -5'
23507 5' -55.1 NC_005259.1 + 26331 0.66 0.746292
Target:  5'- gGGUcgcacagauaGCACGCCcUCGG-GCCGAgCuGCg -3'
miRNA:   3'- aCCA----------CGUGUGGuAGUCaCGGCU-GuCG- -5'
23507 5' -55.1 NC_005259.1 + 19188 0.66 0.735897
Target:  5'- cGGUGCccucgacaGCgaGCUcgUGGUGCgGGCGGCg -3'
miRNA:   3'- aCCACG--------UG--UGGuaGUCACGgCUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.