miRNA display CGI


Results 1 - 20 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23508 3' -56.3 NC_005259.1 + 31372 0.66 0.745489
Target:  5'- cCGAGACCGucccguagcaccCCGGUGACaucgGAGCAcagCGCc -3'
miRNA:   3'- -GCUCUGGU------------GGCCGUUG----CUCGUa--GCGu -5'
23508 3' -56.3 NC_005259.1 + 65338 0.66 0.745489
Target:  5'- uCGAG-CUGCUGuGC-GCGGGCAcgUCGCAg -3'
miRNA:   3'- -GCUCuGGUGGC-CGuUGCUCGU--AGCGU- -5'
23508 3' -56.3 NC_005259.1 + 53521 0.66 0.745489
Target:  5'- uCGuGGCCAgCGGC-ACGGGC-UCGg- -3'
miRNA:   3'- -GCuCUGGUgGCCGuUGCUCGuAGCgu -5'
23508 3' -56.3 NC_005259.1 + 66947 0.66 0.735255
Target:  5'- gCGGGA-CACCGGCGagcuguuucuuGCGcGCcUCGCGg -3'
miRNA:   3'- -GCUCUgGUGGCCGU-----------UGCuCGuAGCGU- -5'
23508 3' -56.3 NC_005259.1 + 45531 0.66 0.735255
Target:  5'- --uGGCCGCCguGGCuGCGAGCGgguugcUCGCc -3'
miRNA:   3'- gcuCUGGUGG--CCGuUGCUCGU------AGCGu -5'
23508 3' -56.3 NC_005259.1 + 29920 0.66 0.735255
Target:  5'- cCGAGACCAUCGacGCGugGccgccacgcGGCccgGUCGCGg -3'
miRNA:   3'- -GCUCUGGUGGC--CGUugC---------UCG---UAGCGU- -5'
23508 3' -56.3 NC_005259.1 + 44835 0.66 0.724923
Target:  5'- aCGAGAUccgaCACCGcGCc-CGAGCAgUCGCu -3'
miRNA:   3'- -GCUCUG----GUGGC-CGuuGCUCGU-AGCGu -5'
23508 3' -56.3 NC_005259.1 + 13772 0.66 0.714503
Target:  5'- aCGAcGugUucgaCGGCGACGAGCAguggUGCGa -3'
miRNA:   3'- -GCU-CugGug--GCCGUUGCUCGUa---GCGU- -5'
23508 3' -56.3 NC_005259.1 + 54332 0.66 0.714503
Target:  5'- uCGGGGCCAUCGG--GCcAGCAUCGa- -3'
miRNA:   3'- -GCUCUGGUGGCCguUGcUCGUAGCgu -5'
23508 3' -56.3 NC_005259.1 + 58404 0.66 0.708212
Target:  5'- ---aGCCACCGGCGGCGAucagagauccaccggGCAgauugCGCu -3'
miRNA:   3'- gcucUGGUGGCCGUUGCU---------------CGUa----GCGu -5'
23508 3' -56.3 NC_005259.1 + 34024 0.66 0.69344
Target:  5'- --cGGCC-UCGGCGGCGuGCGUCGg- -3'
miRNA:   3'- gcuCUGGuGGCCGUUGCuCGUAGCgu -5'
23508 3' -56.3 NC_005259.1 + 52648 0.66 0.69344
Target:  5'- uGGGGCgaGgUGaGCGACGAGCAUUGCc -3'
miRNA:   3'- gCUCUGg-UgGC-CGUUGCUCGUAGCGu -5'
23508 3' -56.3 NC_005259.1 + 23670 0.67 0.682819
Target:  5'- -uGGACCGCCGaCccCGAGCAggCGCAc -3'
miRNA:   3'- gcUCUGGUGGCcGuuGCUCGUa-GCGU- -5'
23508 3' -56.3 NC_005259.1 + 10101 0.67 0.672151
Target:  5'- cCGAGGCCACCGaGCucaaGAcCGUgCGCAu -3'
miRNA:   3'- -GCUCUGGUGGC-CGuug-CUcGUA-GCGU- -5'
23508 3' -56.3 NC_005259.1 + 43013 0.67 0.661448
Target:  5'- aCGAGAacaaACCGGCGAugccgcCGAGCAggcCGCc -3'
miRNA:   3'- -GCUCUgg--UGGCCGUU------GCUCGUa--GCGu -5'
23508 3' -56.3 NC_005259.1 + 37726 0.67 0.661448
Target:  5'- cCGAGgcACCGCCGcCGACGAGCugcUCGa- -3'
miRNA:   3'- -GCUC--UGGUGGCcGUUGCUCGu--AGCgu -5'
23508 3' -56.3 NC_005259.1 + 60810 0.67 0.660376
Target:  5'- cCGAGGCCGgaaaucgUCGGCGAUGcuGGCcaccAUCGCGa -3'
miRNA:   3'- -GCUCUGGU-------GGCCGUUGC--UCG----UAGCGU- -5'
23508 3' -56.3 NC_005259.1 + 48422 0.67 0.655012
Target:  5'- cCGcGACCGCCaccaccgaggcgcgaGGCAGCG-GCAgCGCGu -3'
miRNA:   3'- -GCuCUGGUGG---------------CCGUUGCuCGUaGCGU- -5'
23508 3' -56.3 NC_005259.1 + 24210 0.67 0.650718
Target:  5'- uCGAGACCaucgacaacgugACCGGCGGggcCGAGgCA-CGCGa -3'
miRNA:   3'- -GCUCUGG------------UGGCCGUU---GCUC-GUaGCGU- -5'
23508 3' -56.3 NC_005259.1 + 63721 0.68 0.62922
Target:  5'- uCGGGGCCugcgcaGCCGGUAGCGA-CAUCucgGCGg -3'
miRNA:   3'- -GCUCUGG------UGGCCGUUGCUcGUAG---CGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.