miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23508 3' -56.3 NC_005259.1 + 132 0.68 0.606658
Target:  5'- uCGAGGCCAaCGGCAAgaccuacUGGGC-UCGCc -3'
miRNA:   3'- -GCUCUGGUgGCCGUU-------GCUCGuAGCGu -5'
23508 3' -56.3 NC_005259.1 + 837 0.68 0.61847
Target:  5'- aCGAGACCaaggucGCUGcGCAggccgaguGCGAGCGUgCGCu -3'
miRNA:   3'- -GCUCUGG------UGGC-CGU--------UGCUCGUA-GCGu -5'
23508 3' -56.3 NC_005259.1 + 984 0.68 0.607731
Target:  5'- aCGAGA-CACCGGCAGCcguguGGUGUaCGCGa -3'
miRNA:   3'- -GCUCUgGUGGCCGUUGc----UCGUA-GCGU- -5'
23508 3' -56.3 NC_005259.1 + 6117 0.73 0.330287
Target:  5'- cCGAGGCCGCC-GCuacGCGGGCAcUGCAa -3'
miRNA:   3'- -GCUCUGGUGGcCGu--UGCUCGUaGCGU- -5'
23508 3' -56.3 NC_005259.1 + 10101 0.67 0.672151
Target:  5'- cCGAGGCCACCGaGCucaaGAcCGUgCGCAu -3'
miRNA:   3'- -GCUCUGGUGGC-CGuug-CUcGUA-GCGU- -5'
23508 3' -56.3 NC_005259.1 + 10339 0.68 0.61847
Target:  5'- aCGGGcUCGgCGGCAGCGGGC-UCGaCAu -3'
miRNA:   3'- -GCUCuGGUgGCCGUUGCUCGuAGC-GU- -5'
23508 3' -56.3 NC_005259.1 + 13172 0.7 0.462878
Target:  5'- cCGAGACCGcCCGGCAGCucGCcaUGCu -3'
miRNA:   3'- -GCUCUGGU-GGCCGUUGcuCGuaGCGu -5'
23508 3' -56.3 NC_005259.1 + 13772 0.66 0.714503
Target:  5'- aCGAcGugUucgaCGGCGACGAGCAguggUGCGa -3'
miRNA:   3'- -GCU-CugGug--GCCGUUGCUCGUa---GCGU- -5'
23508 3' -56.3 NC_005259.1 + 15580 0.68 0.607731
Target:  5'- uCGGGGCCAgC-GCGACGGGC--CGCAu -3'
miRNA:   3'- -GCUCUGGUgGcCGUUGCUCGuaGCGU- -5'
23508 3' -56.3 NC_005259.1 + 16511 0.73 0.354448
Target:  5'- cCGAGAgCGa-GGCGcuGCGAGCGUCGCu -3'
miRNA:   3'- -GCUCUgGUggCCGU--UGCUCGUAGCGu -5'
23508 3' -56.3 NC_005259.1 + 16601 0.7 0.482604
Target:  5'- gCGAGGCCAUCGGacuguuCAACGGGcCGagGCAg -3'
miRNA:   3'- -GCUCUGGUGGCC------GUUGCUC-GUagCGU- -5'
23508 3' -56.3 NC_005259.1 + 17759 0.75 0.245951
Target:  5'- uGAGGCCGCCGcGCGcCGGGCcgagCGCAc -3'
miRNA:   3'- gCUCUGGUGGC-CGUuGCUCGua--GCGU- -5'
23508 3' -56.3 NC_005259.1 + 19641 0.68 0.575669
Target:  5'- uGAGACgcuCACCGGCAccgccuCGGGCAgcCGCu -3'
miRNA:   3'- gCUCUG---GUGGCCGUu-----GCUCGUa-GCGu -5'
23508 3' -56.3 NC_005259.1 + 23363 0.7 0.492619
Target:  5'- gCGAGGCCGCCgaGGCAugGAuCGUCa-- -3'
miRNA:   3'- -GCUCUGGUGG--CCGUugCUcGUAGcgu -5'
23508 3' -56.3 NC_005259.1 + 23670 0.67 0.682819
Target:  5'- -uGGACCGCCGaCccCGAGCAggCGCAc -3'
miRNA:   3'- gcUCUGGUGGCcGuuGCUCGUa-GCGU- -5'
23508 3' -56.3 NC_005259.1 + 24210 0.67 0.650718
Target:  5'- uCGAGACCaucgacaacgugACCGGCGGggcCGAGgCA-CGCGa -3'
miRNA:   3'- -GCUCUGG------------UGGCCGUU---GCUC-GUaGCGU- -5'
23508 3' -56.3 NC_005259.1 + 25745 0.74 0.276657
Target:  5'- aGGGACCGCCGcGCAcacuauaccgcuauGCGGGCAgcucUCGCc -3'
miRNA:   3'- gCUCUGGUGGC-CGU--------------UGCUCGU----AGCGu -5'
23508 3' -56.3 NC_005259.1 + 26085 0.68 0.597012
Target:  5'- cCGAGGCCGCCGcCGAgaagaccccCGAGCAgacCGCc -3'
miRNA:   3'- -GCUCUGGUGGCcGUU---------GCUCGUa--GCGu -5'
23508 3' -56.3 NC_005259.1 + 27159 0.71 0.415512
Target:  5'- uGGGGCCAacgaugccgUCGGCGAUGAGCAggcUGCGa -3'
miRNA:   3'- gCUCUGGU---------GGCCGUUGCUCGUa--GCGU- -5'
23508 3' -56.3 NC_005259.1 + 29920 0.66 0.735255
Target:  5'- cCGAGACCAUCGacGCGugGccgccacgcGGCccgGUCGCGg -3'
miRNA:   3'- -GCUCUGGUGGC--CGUugC---------UCG---UAGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.