miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23508 3' -56.3 NC_005259.1 + 30926 0.68 0.575669
Target:  5'- aGcAGGCCAUCGG-AAUGAGCAUCuugGCGa -3'
miRNA:   3'- gC-UCUGGUGGCCgUUGCUCGUAG---CGU- -5'
23508 3' -56.3 NC_005259.1 + 31372 0.66 0.745489
Target:  5'- cCGAGACCGucccguagcaccCCGGUGACaucgGAGCAcagCGCc -3'
miRNA:   3'- -GCUCUGGU------------GGCCGUUG----CUCGUa--GCGu -5'
23508 3' -56.3 NC_005259.1 + 32361 0.7 0.492619
Target:  5'- uGAuGACCGCCGuGUAggGCGGGCAcugcccgccgUCGCGa -3'
miRNA:   3'- gCU-CUGGUGGC-CGU--UGCUCGU----------AGCGU- -5'
23508 3' -56.3 NC_005259.1 + 33120 0.68 0.61847
Target:  5'- -aGGGCCACgCGGCAGCc-GCcgCGCGu -3'
miRNA:   3'- gcUCUGGUG-GCCGUUGcuCGuaGCGU- -5'
23508 3' -56.3 NC_005259.1 + 33914 0.68 0.62922
Target:  5'- cCGAGACCgGCCacGguGCGAGCAuguauUCGCc -3'
miRNA:   3'- -GCUCUGG-UGGc-CguUGCUCGU-----AGCGu -5'
23508 3' -56.3 NC_005259.1 + 34024 0.66 0.69344
Target:  5'- --cGGCC-UCGGCGGCGuGCGUCGg- -3'
miRNA:   3'- gcuCUGGuGGCCGUUGCuCGUAGCgu -5'
23508 3' -56.3 NC_005259.1 + 36045 0.7 0.486599
Target:  5'- gCGAGGCCACCcGCG-CGAGCAccaccugcugugugcUCGUc -3'
miRNA:   3'- -GCUCUGGUGGcCGUuGCUCGU---------------AGCGu -5'
23508 3' -56.3 NC_005259.1 + 36963 0.68 0.586322
Target:  5'- gCGAGACCGCCucGGCccgcaccgcCGAaCGUCGCAc -3'
miRNA:   3'- -GCUCUGGUGG--CCGuu-------GCUcGUAGCGU- -5'
23508 3' -56.3 NC_005259.1 + 37273 0.71 0.415512
Target:  5'- uGAGGCCGcCCGGCAggACuuGCAUgGCGg -3'
miRNA:   3'- gCUCUGGU-GGCCGU--UGcuCGUAgCGU- -5'
23508 3' -56.3 NC_005259.1 + 37726 0.67 0.661448
Target:  5'- cCGAGgcACCGCCGcCGACGAGCugcUCGa- -3'
miRNA:   3'- -GCUC--UGGUGGCcGUUGCUCGu--AGCgu -5'
23508 3' -56.3 NC_005259.1 + 40042 0.71 0.434106
Target:  5'- uGAGGUCGCCGGUGAuCGGGUcgGUCGCGa -3'
miRNA:   3'- gCUCUGGUGGCCGUU-GCUCG--UAGCGU- -5'
23508 3' -56.3 NC_005259.1 + 41773 0.68 0.607731
Target:  5'- gCGcGAacaaCACCGGCAucgGCGAGCAgUCgGCAg -3'
miRNA:   3'- -GCuCUg---GUGGCCGU---UGCUCGU-AG-CGU- -5'
23508 3' -56.3 NC_005259.1 + 43013 0.67 0.661448
Target:  5'- aCGAGAacaaACCGGCGAugccgcCGAGCAggcCGCc -3'
miRNA:   3'- -GCUCUgg--UGGCCGUU------GCUCGUa--GCGu -5'
23508 3' -56.3 NC_005259.1 + 44835 0.66 0.724923
Target:  5'- aCGAGAUccgaCACCGcGCc-CGAGCAgUCGCu -3'
miRNA:   3'- -GCUCUG----GUGGC-CGuuGCUCGU-AGCGu -5'
23508 3' -56.3 NC_005259.1 + 45531 0.66 0.735255
Target:  5'- --uGGCCGCCguGGCuGCGAGCGgguugcUCGCc -3'
miRNA:   3'- gcuCUGGUGG--CCGuUGCUCGU------AGCGu -5'
23508 3' -56.3 NC_005259.1 + 45740 0.69 0.512927
Target:  5'- cCGAGGCCGCgcaccgccuCGGgGAUGAGCA-CGCc -3'
miRNA:   3'- -GCUCUGGUG---------GCCgUUGCUCGUaGCGu -5'
23508 3' -56.3 NC_005259.1 + 46295 0.7 0.499686
Target:  5'- gCGGGGCCGCCGuggcugcguuguucGCGGCcccGAGgGUCGCGu -3'
miRNA:   3'- -GCUCUGGUGGC--------------CGUUG---CUCgUAGCGU- -5'
23508 3' -56.3 NC_005259.1 + 48422 0.67 0.655012
Target:  5'- cCGcGACCGCCaccaccgaggcgcgaGGCAGCG-GCAgCGCGu -3'
miRNA:   3'- -GCuCUGGUGG---------------CCGUUGCuCGUaGCGU- -5'
23508 3' -56.3 NC_005259.1 + 50307 0.69 0.544003
Target:  5'- ---uGCCACucgucguacuCGGCAACGAGCucGUCGCGg -3'
miRNA:   3'- gcucUGGUG----------GCCGUUGCUCG--UAGCGU- -5'
23508 3' -56.3 NC_005259.1 + 52575 0.69 0.523209
Target:  5'- --cGACCggACCGGCc-UGAGCGUCGCc -3'
miRNA:   3'- gcuCUGG--UGGCCGuuGCUCGUAGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.