Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23508 | 3' | -56.3 | NC_005259.1 | + | 30926 | 0.68 | 0.575669 |
Target: 5'- aGcAGGCCAUCGG-AAUGAGCAUCuugGCGa -3' miRNA: 3'- gC-UCUGGUGGCCgUUGCUCGUAG---CGU- -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 31372 | 0.66 | 0.745489 |
Target: 5'- cCGAGACCGucccguagcaccCCGGUGACaucgGAGCAcagCGCc -3' miRNA: 3'- -GCUCUGGU------------GGCCGUUG----CUCGUa--GCGu -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 32361 | 0.7 | 0.492619 |
Target: 5'- uGAuGACCGCCGuGUAggGCGGGCAcugcccgccgUCGCGa -3' miRNA: 3'- gCU-CUGGUGGC-CGU--UGCUCGU----------AGCGU- -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 33120 | 0.68 | 0.61847 |
Target: 5'- -aGGGCCACgCGGCAGCc-GCcgCGCGu -3' miRNA: 3'- gcUCUGGUG-GCCGUUGcuCGuaGCGU- -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 33914 | 0.68 | 0.62922 |
Target: 5'- cCGAGACCgGCCacGguGCGAGCAuguauUCGCc -3' miRNA: 3'- -GCUCUGG-UGGc-CguUGCUCGU-----AGCGu -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 34024 | 0.66 | 0.69344 |
Target: 5'- --cGGCC-UCGGCGGCGuGCGUCGg- -3' miRNA: 3'- gcuCUGGuGGCCGUUGCuCGUAGCgu -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 36045 | 0.7 | 0.486599 |
Target: 5'- gCGAGGCCACCcGCG-CGAGCAccaccugcugugugcUCGUc -3' miRNA: 3'- -GCUCUGGUGGcCGUuGCUCGU---------------AGCGu -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 36963 | 0.68 | 0.586322 |
Target: 5'- gCGAGACCGCCucGGCccgcaccgcCGAaCGUCGCAc -3' miRNA: 3'- -GCUCUGGUGG--CCGuu-------GCUcGUAGCGU- -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 37273 | 0.71 | 0.415512 |
Target: 5'- uGAGGCCGcCCGGCAggACuuGCAUgGCGg -3' miRNA: 3'- gCUCUGGU-GGCCGU--UGcuCGUAgCGU- -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 37726 | 0.67 | 0.661448 |
Target: 5'- cCGAGgcACCGCCGcCGACGAGCugcUCGa- -3' miRNA: 3'- -GCUC--UGGUGGCcGUUGCUCGu--AGCgu -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 40042 | 0.71 | 0.434106 |
Target: 5'- uGAGGUCGCCGGUGAuCGGGUcgGUCGCGa -3' miRNA: 3'- gCUCUGGUGGCCGUU-GCUCG--UAGCGU- -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 41773 | 0.68 | 0.607731 |
Target: 5'- gCGcGAacaaCACCGGCAucgGCGAGCAgUCgGCAg -3' miRNA: 3'- -GCuCUg---GUGGCCGU---UGCUCGU-AG-CGU- -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 43013 | 0.67 | 0.661448 |
Target: 5'- aCGAGAacaaACCGGCGAugccgcCGAGCAggcCGCc -3' miRNA: 3'- -GCUCUgg--UGGCCGUU------GCUCGUa--GCGu -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 44835 | 0.66 | 0.724923 |
Target: 5'- aCGAGAUccgaCACCGcGCc-CGAGCAgUCGCu -3' miRNA: 3'- -GCUCUG----GUGGC-CGuuGCUCGU-AGCGu -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 45531 | 0.66 | 0.735255 |
Target: 5'- --uGGCCGCCguGGCuGCGAGCGgguugcUCGCc -3' miRNA: 3'- gcuCUGGUGG--CCGuUGCUCGU------AGCGu -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 45740 | 0.69 | 0.512927 |
Target: 5'- cCGAGGCCGCgcaccgccuCGGgGAUGAGCA-CGCc -3' miRNA: 3'- -GCUCUGGUG---------GCCgUUGCUCGUaGCGu -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 46295 | 0.7 | 0.499686 |
Target: 5'- gCGGGGCCGCCGuggcugcguuguucGCGGCcccGAGgGUCGCGu -3' miRNA: 3'- -GCUCUGGUGGC--------------CGUUG---CUCgUAGCGU- -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 48422 | 0.67 | 0.655012 |
Target: 5'- cCGcGACCGCCaccaccgaggcgcgaGGCAGCG-GCAgCGCGu -3' miRNA: 3'- -GCuCUGGUGG---------------CCGUUGCuCGUaGCGU- -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 50307 | 0.69 | 0.544003 |
Target: 5'- ---uGCCACucgucguacuCGGCAACGAGCucGUCGCGg -3' miRNA: 3'- gcucUGGUG----------GCCGUUGCUCG--UAGCGU- -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 52575 | 0.69 | 0.523209 |
Target: 5'- --cGACCggACCGGCc-UGAGCGUCGCc -3' miRNA: 3'- gcuCUGG--UGGCCGuuGCUCGUAGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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