miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23508 3' -56.3 NC_005259.1 + 33914 0.68 0.62922
Target:  5'- cCGAGACCgGCCacGguGCGAGCAuguauUCGCc -3'
miRNA:   3'- -GCUCUGG-UGGc-CguUGCUCGU-----AGCGu -5'
23508 3' -56.3 NC_005259.1 + 58338 0.68 0.62922
Target:  5'- gCGAGAUCAggUCGGUGGCcucGGGCAcgUCGCAg -3'
miRNA:   3'- -GCUCUGGU--GGCCGUUG---CUCGU--AGCGU- -5'
23508 3' -56.3 NC_005259.1 + 67256 0.68 0.62922
Target:  5'- gCGGGGCCuCgGGCAGCc-GUGUCGCGu -3'
miRNA:   3'- -GCUCUGGuGgCCGUUGcuCGUAGCGU- -5'
23508 3' -56.3 NC_005259.1 + 63721 0.68 0.62922
Target:  5'- uCGGGGCCugcgcaGCCGGUAGCGA-CAUCucgGCGg -3'
miRNA:   3'- -GCUCUGG------UGGCCGUUGCUcGUAG---CGU- -5'
23508 3' -56.3 NC_005259.1 + 33120 0.68 0.61847
Target:  5'- -aGGGCCACgCGGCAGCc-GCcgCGCGu -3'
miRNA:   3'- gcUCUGGUG-GCCGUUGcuCGuaGCGU- -5'
23508 3' -56.3 NC_005259.1 + 10339 0.68 0.61847
Target:  5'- aCGGGcUCGgCGGCAGCGGGC-UCGaCAu -3'
miRNA:   3'- -GCUCuGGUgGCCGUUGCUCGuAGC-GU- -5'
23508 3' -56.3 NC_005259.1 + 837 0.68 0.61847
Target:  5'- aCGAGACCaaggucGCUGcGCAggccgaguGCGAGCGUgCGCu -3'
miRNA:   3'- -GCUCUGG------UGGC-CGU--------UGCUCGUA-GCGu -5'
23508 3' -56.3 NC_005259.1 + 65974 0.68 0.607731
Target:  5'- cCGAGAUCACaGGCGcgcCGAGCAgcCGCu -3'
miRNA:   3'- -GCUCUGGUGgCCGUu--GCUCGUa-GCGu -5'
23508 3' -56.3 NC_005259.1 + 984 0.68 0.607731
Target:  5'- aCGAGA-CACCGGCAGCcguguGGUGUaCGCGa -3'
miRNA:   3'- -GCUCUgGUGGCCGUUGc----UCGUA-GCGU- -5'
23508 3' -56.3 NC_005259.1 + 41773 0.68 0.607731
Target:  5'- gCGcGAacaaCACCGGCAucgGCGAGCAgUCgGCAg -3'
miRNA:   3'- -GCuCUg---GUGGCCGU---UGCUCGU-AG-CGU- -5'
23508 3' -56.3 NC_005259.1 + 132 0.68 0.606658
Target:  5'- uCGAGGCCAaCGGCAAgaccuacUGGGC-UCGCc -3'
miRNA:   3'- -GCUCUGGUgGCCGUU-------GCUCGuAGCGu -5'
23508 3' -56.3 NC_005259.1 + 26085 0.68 0.597012
Target:  5'- cCGAGGCCGCCGcCGAgaagaccccCGAGCAgacCGCc -3'
miRNA:   3'- -GCUCUGGUGGCcGUU---------GCUCGUa--GCGu -5'
23508 3' -56.3 NC_005259.1 + 36963 0.68 0.586322
Target:  5'- gCGAGACCGCCucGGCccgcaccgcCGAaCGUCGCAc -3'
miRNA:   3'- -GCUCUGGUGG--CCGuu-------GCUcGUAGCGU- -5'
23508 3' -56.3 NC_005259.1 + 30926 0.68 0.575669
Target:  5'- aGcAGGCCAUCGG-AAUGAGCAUCuugGCGa -3'
miRNA:   3'- gC-UCUGGUGGCCgUUGCUCGUAG---CGU- -5'
23508 3' -56.3 NC_005259.1 + 19641 0.68 0.575669
Target:  5'- uGAGACgcuCACCGGCAccgccuCGGGCAgcCGCu -3'
miRNA:   3'- gCUCUG---GUGGCCGUu-----GCUCGUa-GCGu -5'
23508 3' -56.3 NC_005259.1 + 65378 0.69 0.565059
Target:  5'- ---cGCCACCGGUAA-GGGCAaCGCAg -3'
miRNA:   3'- gcucUGGUGGCCGUUgCUCGUaGCGU- -5'
23508 3' -56.3 NC_005259.1 + 50307 0.69 0.544003
Target:  5'- ---uGCCACucgucguacuCGGCAACGAGCucGUCGCGg -3'
miRNA:   3'- gcucUGGUG----------GCCGUUGCUCG--UAGCGU- -5'
23508 3' -56.3 NC_005259.1 + 56656 0.69 0.53357
Target:  5'- uCGAGGgCACCGcGCGucACGGGCucGUUGCGc -3'
miRNA:   3'- -GCUCUgGUGGC-CGU--UGCUCG--UAGCGU- -5'
23508 3' -56.3 NC_005259.1 + 52575 0.69 0.523209
Target:  5'- --cGACCggACCGGCc-UGAGCGUCGCc -3'
miRNA:   3'- gcuCUGG--UGGCCGuuGCUCGUAGCGu -5'
23508 3' -56.3 NC_005259.1 + 45740 0.69 0.512927
Target:  5'- cCGAGGCCGCgcaccgccuCGGgGAUGAGCA-CGCc -3'
miRNA:   3'- -GCUCUGGUG---------GCCgUUGCUCGUaGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.