miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23508 3' -56.3 NC_005259.1 + 54332 0.66 0.714503
Target:  5'- uCGGGGCCAUCGG--GCcAGCAUCGa- -3'
miRNA:   3'- -GCUCUGGUGGCCguUGcUCGUAGCgu -5'
23508 3' -56.3 NC_005259.1 + 13772 0.66 0.714503
Target:  5'- aCGAcGugUucgaCGGCGACGAGCAguggUGCGa -3'
miRNA:   3'- -GCU-CugGug--GCCGUUGCUCGUa---GCGU- -5'
23508 3' -56.3 NC_005259.1 + 44835 0.66 0.724923
Target:  5'- aCGAGAUccgaCACCGcGCc-CGAGCAgUCGCu -3'
miRNA:   3'- -GCUCUG----GUGGC-CGuuGCUCGU-AGCGu -5'
23508 3' -56.3 NC_005259.1 + 66947 0.66 0.735255
Target:  5'- gCGGGA-CACCGGCGagcuguuucuuGCGcGCcUCGCGg -3'
miRNA:   3'- -GCUCUgGUGGCCGU-----------UGCuCGuAGCGU- -5'
23508 3' -56.3 NC_005259.1 + 45531 0.66 0.735255
Target:  5'- --uGGCCGCCguGGCuGCGAGCGgguugcUCGCc -3'
miRNA:   3'- gcuCUGGUGG--CCGuUGCUCGU------AGCGu -5'
23508 3' -56.3 NC_005259.1 + 29920 0.66 0.735255
Target:  5'- cCGAGACCAUCGacGCGugGccgccacgcGGCccgGUCGCGg -3'
miRNA:   3'- -GCUCUGGUGGC--CGUugC---------UCG---UAGCGU- -5'
23508 3' -56.3 NC_005259.1 + 53521 0.66 0.745489
Target:  5'- uCGuGGCCAgCGGC-ACGGGC-UCGg- -3'
miRNA:   3'- -GCuCUGGUgGCCGuUGCUCGuAGCgu -5'
23508 3' -56.3 NC_005259.1 + 31372 0.66 0.745489
Target:  5'- cCGAGACCGucccguagcaccCCGGUGACaucgGAGCAcagCGCc -3'
miRNA:   3'- -GCUCUGGU------------GGCCGUUG----CUCGUa--GCGu -5'
23508 3' -56.3 NC_005259.1 + 65338 0.66 0.745489
Target:  5'- uCGAG-CUGCUGuGC-GCGGGCAcgUCGCAg -3'
miRNA:   3'- -GCUCuGGUGGC-CGuUGCUCGU--AGCGU- -5'
23508 3' -56.3 NC_005259.1 + 32361 0.7 0.492619
Target:  5'- uGAuGACCGCCGuGUAggGCGGGCAcugcccgccgUCGCGa -3'
miRNA:   3'- gCU-CUGGUGGC-CGU--UGCUCGU----------AGCGU- -5'
23508 3' -56.3 NC_005259.1 + 54151 0.74 0.271896
Target:  5'- uCGAGGCC--CGGCGAUGGGCAUacCGCAa -3'
miRNA:   3'- -GCUCUGGugGCCGUUGCUCGUA--GCGU- -5'
23508 3' -56.3 NC_005259.1 + 25745 0.74 0.276657
Target:  5'- aGGGACCGCCGcGCAcacuauaccgcuauGCGGGCAgcucUCGCc -3'
miRNA:   3'- gCUCUGGUGGC-CGU--------------UGCUCGU----AGCGu -5'
23508 3' -56.3 NC_005259.1 + 6117 0.73 0.330287
Target:  5'- cCGAGGCCGCC-GCuacGCGGGCAcUGCAa -3'
miRNA:   3'- -GCUCUGGUGGcCGu--UGCUCGUaGCGU- -5'
23508 3' -56.3 NC_005259.1 + 16511 0.73 0.354448
Target:  5'- cCGAGAgCGa-GGCGcuGCGAGCGUCGCu -3'
miRNA:   3'- -GCUCUgGUggCCGU--UGCUCGUAGCGu -5'
23508 3' -56.3 NC_005259.1 + 67984 0.72 0.37983
Target:  5'- gCGuGGCCACC-GCcGCGAGCGUCGa- -3'
miRNA:   3'- -GCuCUGGUGGcCGuUGCUCGUAGCgu -5'
23508 3' -56.3 NC_005259.1 + 27159 0.71 0.415512
Target:  5'- uGGGGCCAacgaugccgUCGGCGAUGAGCAggcUGCGa -3'
miRNA:   3'- gCUCUGGU---------GGCCGUUGCUCGUa--GCGU- -5'
23508 3' -56.3 NC_005259.1 + 37273 0.71 0.415512
Target:  5'- uGAGGCCGcCCGGCAggACuuGCAUgGCGg -3'
miRNA:   3'- gCUCUGGU-GGCCGU--UGcuCGUAgCGU- -5'
23508 3' -56.3 NC_005259.1 + 40042 0.71 0.434106
Target:  5'- uGAGGUCGCCGGUGAuCGGGUcgGUCGCGa -3'
miRNA:   3'- gCUCUGGUGGCCGUU-GCUCG--UAGCGU- -5'
23508 3' -56.3 NC_005259.1 + 13172 0.7 0.462878
Target:  5'- cCGAGACCGcCCGGCAGCucGCcaUGCu -3'
miRNA:   3'- -GCUCUGGU-GGCCGUUGcuCGuaGCGu -5'
23508 3' -56.3 NC_005259.1 + 16601 0.7 0.482604
Target:  5'- gCGAGGCCAUCGGacuguuCAACGGGcCGagGCAg -3'
miRNA:   3'- -GCUCUGGUGGCC------GUUGCUC-GUagCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.