Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23508 | 3' | -56.3 | NC_005259.1 | + | 50307 | 0.69 | 0.544003 |
Target: 5'- ---uGCCACucgucguacuCGGCAACGAGCucGUCGCGg -3' miRNA: 3'- gcucUGGUG----------GCCGUUGCUCG--UAGCGU- -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 65378 | 0.69 | 0.565059 |
Target: 5'- ---cGCCACCGGUAA-GGGCAaCGCAg -3' miRNA: 3'- gcucUGGUGGCCGUUgCUCGUaGCGU- -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 19641 | 0.68 | 0.575669 |
Target: 5'- uGAGACgcuCACCGGCAccgccuCGGGCAgcCGCu -3' miRNA: 3'- gCUCUG---GUGGCCGUu-----GCUCGUa-GCGu -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 30926 | 0.68 | 0.575669 |
Target: 5'- aGcAGGCCAUCGG-AAUGAGCAUCuugGCGa -3' miRNA: 3'- gC-UCUGGUGGCCgUUGCUCGUAG---CGU- -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 36963 | 0.68 | 0.586322 |
Target: 5'- gCGAGACCGCCucGGCccgcaccgcCGAaCGUCGCAc -3' miRNA: 3'- -GCUCUGGUGG--CCGuu-------GCUcGUAGCGU- -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 26085 | 0.68 | 0.597012 |
Target: 5'- cCGAGGCCGCCGcCGAgaagaccccCGAGCAgacCGCc -3' miRNA: 3'- -GCUCUGGUGGCcGUU---------GCUCGUa--GCGu -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 132 | 0.68 | 0.606658 |
Target: 5'- uCGAGGCCAaCGGCAAgaccuacUGGGC-UCGCc -3' miRNA: 3'- -GCUCUGGUgGCCGUU-------GCUCGuAGCGu -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 41773 | 0.68 | 0.607731 |
Target: 5'- gCGcGAacaaCACCGGCAucgGCGAGCAgUCgGCAg -3' miRNA: 3'- -GCuCUg---GUGGCCGU---UGCUCGU-AG-CGU- -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 15580 | 0.68 | 0.607731 |
Target: 5'- uCGGGGCCAgC-GCGACGGGC--CGCAu -3' miRNA: 3'- -GCUCUGGUgGcCGUUGCUCGuaGCGU- -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 984 | 0.68 | 0.607731 |
Target: 5'- aCGAGA-CACCGGCAGCcguguGGUGUaCGCGa -3' miRNA: 3'- -GCUCUgGUGGCCGUUGc----UCGUA-GCGU- -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 65974 | 0.68 | 0.607731 |
Target: 5'- cCGAGAUCACaGGCGcgcCGAGCAgcCGCu -3' miRNA: 3'- -GCUCUGGUGgCCGUu--GCUCGUa-GCGu -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 33120 | 0.68 | 0.61847 |
Target: 5'- -aGGGCCACgCGGCAGCc-GCcgCGCGu -3' miRNA: 3'- gcUCUGGUG-GCCGUUGcuCGuaGCGU- -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 10339 | 0.68 | 0.61847 |
Target: 5'- aCGGGcUCGgCGGCAGCGGGC-UCGaCAu -3' miRNA: 3'- -GCUCuGGUgGCCGUUGCUCGuAGC-GU- -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 837 | 0.68 | 0.61847 |
Target: 5'- aCGAGACCaaggucGCUGcGCAggccgaguGCGAGCGUgCGCu -3' miRNA: 3'- -GCUCUGG------UGGC-CGU--------UGCUCGUA-GCGu -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 63721 | 0.68 | 0.62922 |
Target: 5'- uCGGGGCCugcgcaGCCGGUAGCGA-CAUCucgGCGg -3' miRNA: 3'- -GCUCUGG------UGGCCGUUGCUcGUAG---CGU- -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 67256 | 0.68 | 0.62922 |
Target: 5'- gCGGGGCCuCgGGCAGCc-GUGUCGCGu -3' miRNA: 3'- -GCUCUGGuGgCCGUUGcuCGUAGCGU- -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 58338 | 0.68 | 0.62922 |
Target: 5'- gCGAGAUCAggUCGGUGGCcucGGGCAcgUCGCAg -3' miRNA: 3'- -GCUCUGGU--GGCCGUUG---CUCGU--AGCGU- -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 33914 | 0.68 | 0.62922 |
Target: 5'- cCGAGACCgGCCacGguGCGAGCAuguauUCGCc -3' miRNA: 3'- -GCUCUGG-UGGc-CguUGCUCGU-----AGCGu -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 24210 | 0.67 | 0.650718 |
Target: 5'- uCGAGACCaucgacaacgugACCGGCGGggcCGAGgCA-CGCGa -3' miRNA: 3'- -GCUCUGG------------UGGCCGUU---GCUC-GUaGCGU- -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 48422 | 0.67 | 0.655012 |
Target: 5'- cCGcGACCGCCaccaccgaggcgcgaGGCAGCG-GCAgCGCGu -3' miRNA: 3'- -GCuCUGGUGG---------------CCGUUGCuCGUaGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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