miRNA display CGI


Results 1 - 20 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23508 3' -56.3 NC_005259.1 + 67984 0.72 0.37983
Target:  5'- gCGuGGCCACC-GCcGCGAGCGUCGa- -3'
miRNA:   3'- -GCuCUGGUGGcCGuUGCUCGUAGCgu -5'
23508 3' -56.3 NC_005259.1 + 67256 0.68 0.62922
Target:  5'- gCGGGGCCuCgGGCAGCc-GUGUCGCGu -3'
miRNA:   3'- -GCUCUGGuGgCCGUUGcuCGUAGCGU- -5'
23508 3' -56.3 NC_005259.1 + 66947 0.66 0.735255
Target:  5'- gCGGGA-CACCGGCGagcuguuucuuGCGcGCcUCGCGg -3'
miRNA:   3'- -GCUCUgGUGGCCGU-----------UGCuCGuAGCGU- -5'
23508 3' -56.3 NC_005259.1 + 65974 0.68 0.607731
Target:  5'- cCGAGAUCACaGGCGcgcCGAGCAgcCGCu -3'
miRNA:   3'- -GCUCUGGUGgCCGUu--GCUCGUa-GCGu -5'
23508 3' -56.3 NC_005259.1 + 65378 0.69 0.565059
Target:  5'- ---cGCCACCGGUAA-GGGCAaCGCAg -3'
miRNA:   3'- gcucUGGUGGCCGUUgCUCGUaGCGU- -5'
23508 3' -56.3 NC_005259.1 + 65338 0.66 0.745489
Target:  5'- uCGAG-CUGCUGuGC-GCGGGCAcgUCGCAg -3'
miRNA:   3'- -GCUCuGGUGGC-CGuUGCUCGU--AGCGU- -5'
23508 3' -56.3 NC_005259.1 + 63721 0.68 0.62922
Target:  5'- uCGGGGCCugcgcaGCCGGUAGCGA-CAUCucgGCGg -3'
miRNA:   3'- -GCUCUGG------UGGCCGUUGCUcGUAG---CGU- -5'
23508 3' -56.3 NC_005259.1 + 63555 0.7 0.482604
Target:  5'- uCGGcGGCCACCGacGCGACGAGCGggauauaCGCc -3'
miRNA:   3'- -GCU-CUGGUGGC--CGUUGCUCGUa------GCGu -5'
23508 3' -56.3 NC_005259.1 + 60810 0.67 0.660376
Target:  5'- cCGAGGCCGgaaaucgUCGGCGAUGcuGGCcaccAUCGCGa -3'
miRNA:   3'- -GCUCUGGU-------GGCCGUUGC--UCG----UAGCGU- -5'
23508 3' -56.3 NC_005259.1 + 58404 0.66 0.708212
Target:  5'- ---aGCCACCGGCGGCGAucagagauccaccggGCAgauugCGCu -3'
miRNA:   3'- gcucUGGUGGCCGUUGCU---------------CGUa----GCGu -5'
23508 3' -56.3 NC_005259.1 + 58338 0.68 0.62922
Target:  5'- gCGAGAUCAggUCGGUGGCcucGGGCAcgUCGCAg -3'
miRNA:   3'- -GCUCUGGU--GGCCGUUG---CUCGU--AGCGU- -5'
23508 3' -56.3 NC_005259.1 + 56656 0.69 0.53357
Target:  5'- uCGAGGgCACCGcGCGucACGGGCucGUUGCGc -3'
miRNA:   3'- -GCUCUgGUGGC-CGU--UGCUCG--UAGCGU- -5'
23508 3' -56.3 NC_005259.1 + 54332 0.66 0.714503
Target:  5'- uCGGGGCCAUCGG--GCcAGCAUCGa- -3'
miRNA:   3'- -GCUCUGGUGGCCguUGcUCGUAGCgu -5'
23508 3' -56.3 NC_005259.1 + 54151 0.74 0.271896
Target:  5'- uCGAGGCC--CGGCGAUGGGCAUacCGCAa -3'
miRNA:   3'- -GCUCUGGugGCCGUUGCUCGUA--GCGU- -5'
23508 3' -56.3 NC_005259.1 + 53667 0.7 0.502728
Target:  5'- cCGAGGCC-CCac--GCGGGCAUCGCGa -3'
miRNA:   3'- -GCUCUGGuGGccguUGCUCGUAGCGU- -5'
23508 3' -56.3 NC_005259.1 + 53521 0.66 0.745489
Target:  5'- uCGuGGCCAgCGGC-ACGGGC-UCGg- -3'
miRNA:   3'- -GCuCUGGUgGCCGuUGCUCGuAGCgu -5'
23508 3' -56.3 NC_005259.1 + 52648 0.66 0.69344
Target:  5'- uGGGGCgaGgUGaGCGACGAGCAUUGCc -3'
miRNA:   3'- gCUCUGg-UgGC-CGUUGCUCGUAGCGu -5'
23508 3' -56.3 NC_005259.1 + 52575 0.69 0.523209
Target:  5'- --cGACCggACCGGCc-UGAGCGUCGCc -3'
miRNA:   3'- gcuCUGG--UGGCCGuuGCUCGUAGCGu -5'
23508 3' -56.3 NC_005259.1 + 50307 0.69 0.544003
Target:  5'- ---uGCCACucgucguacuCGGCAACGAGCucGUCGCGg -3'
miRNA:   3'- gcucUGGUG----------GCCGUUGCUCG--UAGCGU- -5'
23508 3' -56.3 NC_005259.1 + 48422 0.67 0.655012
Target:  5'- cCGcGACCGCCaccaccgaggcgcgaGGCAGCG-GCAgCGCGu -3'
miRNA:   3'- -GCuCUGGUGG---------------CCGUUGCuCGUaGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.