Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23508 | 3' | -56.3 | NC_005259.1 | + | 67984 | 0.72 | 0.37983 |
Target: 5'- gCGuGGCCACC-GCcGCGAGCGUCGa- -3' miRNA: 3'- -GCuCUGGUGGcCGuUGCUCGUAGCgu -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 67256 | 0.68 | 0.62922 |
Target: 5'- gCGGGGCCuCgGGCAGCc-GUGUCGCGu -3' miRNA: 3'- -GCUCUGGuGgCCGUUGcuCGUAGCGU- -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 66947 | 0.66 | 0.735255 |
Target: 5'- gCGGGA-CACCGGCGagcuguuucuuGCGcGCcUCGCGg -3' miRNA: 3'- -GCUCUgGUGGCCGU-----------UGCuCGuAGCGU- -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 65974 | 0.68 | 0.607731 |
Target: 5'- cCGAGAUCACaGGCGcgcCGAGCAgcCGCu -3' miRNA: 3'- -GCUCUGGUGgCCGUu--GCUCGUa-GCGu -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 65378 | 0.69 | 0.565059 |
Target: 5'- ---cGCCACCGGUAA-GGGCAaCGCAg -3' miRNA: 3'- gcucUGGUGGCCGUUgCUCGUaGCGU- -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 65338 | 0.66 | 0.745489 |
Target: 5'- uCGAG-CUGCUGuGC-GCGGGCAcgUCGCAg -3' miRNA: 3'- -GCUCuGGUGGC-CGuUGCUCGU--AGCGU- -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 63721 | 0.68 | 0.62922 |
Target: 5'- uCGGGGCCugcgcaGCCGGUAGCGA-CAUCucgGCGg -3' miRNA: 3'- -GCUCUGG------UGGCCGUUGCUcGUAG---CGU- -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 63555 | 0.7 | 0.482604 |
Target: 5'- uCGGcGGCCACCGacGCGACGAGCGggauauaCGCc -3' miRNA: 3'- -GCU-CUGGUGGC--CGUUGCUCGUa------GCGu -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 60810 | 0.67 | 0.660376 |
Target: 5'- cCGAGGCCGgaaaucgUCGGCGAUGcuGGCcaccAUCGCGa -3' miRNA: 3'- -GCUCUGGU-------GGCCGUUGC--UCG----UAGCGU- -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 58404 | 0.66 | 0.708212 |
Target: 5'- ---aGCCACCGGCGGCGAucagagauccaccggGCAgauugCGCu -3' miRNA: 3'- gcucUGGUGGCCGUUGCU---------------CGUa----GCGu -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 58338 | 0.68 | 0.62922 |
Target: 5'- gCGAGAUCAggUCGGUGGCcucGGGCAcgUCGCAg -3' miRNA: 3'- -GCUCUGGU--GGCCGUUG---CUCGU--AGCGU- -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 56656 | 0.69 | 0.53357 |
Target: 5'- uCGAGGgCACCGcGCGucACGGGCucGUUGCGc -3' miRNA: 3'- -GCUCUgGUGGC-CGU--UGCUCG--UAGCGU- -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 54332 | 0.66 | 0.714503 |
Target: 5'- uCGGGGCCAUCGG--GCcAGCAUCGa- -3' miRNA: 3'- -GCUCUGGUGGCCguUGcUCGUAGCgu -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 54151 | 0.74 | 0.271896 |
Target: 5'- uCGAGGCC--CGGCGAUGGGCAUacCGCAa -3' miRNA: 3'- -GCUCUGGugGCCGUUGCUCGUA--GCGU- -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 53667 | 0.7 | 0.502728 |
Target: 5'- cCGAGGCC-CCac--GCGGGCAUCGCGa -3' miRNA: 3'- -GCUCUGGuGGccguUGCUCGUAGCGU- -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 53521 | 0.66 | 0.745489 |
Target: 5'- uCGuGGCCAgCGGC-ACGGGC-UCGg- -3' miRNA: 3'- -GCuCUGGUgGCCGuUGCUCGuAGCgu -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 52648 | 0.66 | 0.69344 |
Target: 5'- uGGGGCgaGgUGaGCGACGAGCAUUGCc -3' miRNA: 3'- gCUCUGg-UgGC-CGUUGCUCGUAGCGu -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 52575 | 0.69 | 0.523209 |
Target: 5'- --cGACCggACCGGCc-UGAGCGUCGCc -3' miRNA: 3'- gcuCUGG--UGGCCGuuGCUCGUAGCGu -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 50307 | 0.69 | 0.544003 |
Target: 5'- ---uGCCACucgucguacuCGGCAACGAGCucGUCGCGg -3' miRNA: 3'- gcucUGGUG----------GCCGUUGCUCG--UAGCGU- -5' |
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23508 | 3' | -56.3 | NC_005259.1 | + | 48422 | 0.67 | 0.655012 |
Target: 5'- cCGcGACCGCCaccaccgaggcgcgaGGCAGCG-GCAgCGCGu -3' miRNA: 3'- -GCuCUGGUGG---------------CCGUUGCuCGUaGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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