miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23508 5' -64.5 NC_005259.1 + 2203 0.66 0.355642
Target:  5'- cGGCaAGGUGcugcgcaccgagcGCCCGGcCUCGCCauuugucGGCg -3'
miRNA:   3'- -UCGcUCCAC-------------CGGGCC-GAGCGGcu-----CCG- -5'
23508 5' -64.5 NC_005259.1 + 8431 0.66 0.348625
Target:  5'- uGCGAugcucguugccGGUGGUCuCGGUgugGUCGAGGUa -3'
miRNA:   3'- uCGCU-----------CCACCGG-GCCGag-CGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 36412 0.66 0.348625
Target:  5'- gAGCGccucaaGGGUcauGGUCUGcGCagcgUCGCCGAGGUc -3'
miRNA:   3'- -UCGC------UCCA---CCGGGC-CG----AGCGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 47057 0.66 0.347852
Target:  5'- gAGCGuguuGGUGaGCgaGGCgagCGCCGAgacgaugGGCa -3'
miRNA:   3'- -UCGCu---CCAC-CGggCCGa--GCGGCU-------CCG- -5'
23508 5' -64.5 NC_005259.1 + 68844 0.66 0.345539
Target:  5'- cGGUGAGGUGGgCCaucaugucgacuuGCccgCGCCGGGcGCg -3'
miRNA:   3'- -UCGCUCCACCgGGc------------CGa--GCGGCUC-CG- -5'
23508 5' -64.5 NC_005259.1 + 35656 0.66 0.341708
Target:  5'- uGGCGAgGGUGGCCagcgCGGUgguggugcacagcgaCGCCGugcccGGCg -3'
miRNA:   3'- -UCGCU-CCACCGG----GCCGa--------------GCGGCu----CCG- -5'
23508 5' -64.5 NC_005259.1 + 42917 0.66 0.340946
Target:  5'- cGUu-GGUGGCCUugagcaugaGGCccUCGCCGuGGGCg -3'
miRNA:   3'- uCGcuCCACCGGG---------CCG--AGCGGC-UCCG- -5'
23508 5' -64.5 NC_005259.1 + 48051 0.66 0.340946
Target:  5'- ----cGGUGGCCaCGGCggguagCGCCGccGCg -3'
miRNA:   3'- ucgcuCCACCGG-GCCGa-----GCGGCucCG- -5'
23508 5' -64.5 NC_005259.1 + 6209 0.66 0.340185
Target:  5'- gAGCGGGGUGaGCC--GCcgCGCCGAcaccgugaccgugGGCg -3'
miRNA:   3'- -UCGCUCCAC-CGGgcCGa-GCGGCU-------------CCG- -5'
23508 5' -64.5 NC_005259.1 + 63658 0.66 0.326694
Target:  5'- uGGCcGGGacgccggacaccucgGGCaCCGGCgCGCCGGGGa -3'
miRNA:   3'- -UCGcUCCa--------------CCG-GGCCGaGCGGCUCCg -5'
23508 5' -64.5 NC_005259.1 + 60053 0.66 0.32522
Target:  5'- -uCGGGGUcuucucgggcucaGGCUcgggCGGCUCGCCGAcuuucucgauGGCg -3'
miRNA:   3'- ucGCUCCA-------------CCGG----GCCGAGCGGCU----------CCG- -5'
23508 5' -64.5 NC_005259.1 + 46676 0.66 0.318648
Target:  5'- cGGCGAGcucGGCCUGaGC-CGCCGccGCg -3'
miRNA:   3'- -UCGCUCca-CCGGGC-CGaGCGGCucCG- -5'
23508 5' -64.5 NC_005259.1 + 42260 0.66 0.311462
Target:  5'- uGUGAGGUGGUCa----CGUCGAGGCc -3'
miRNA:   3'- uCGCUCCACCGGgccgaGCGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 56405 0.66 0.311462
Target:  5'- -uCGAuGGU-GCCCGGCcCGCCGAGcucaaGCa -3'
miRNA:   3'- ucGCU-CCAcCGGGCCGaGCGGCUC-----CG- -5'
23508 5' -64.5 NC_005259.1 + 23287 0.66 0.310751
Target:  5'- gGGCGcGGUGGUuggguaucgggguCCGGCgcggucggugUCGCCGAGcCg -3'
miRNA:   3'- -UCGCuCCACCG-------------GGCCG----------AGCGGCUCcG- -5'
23508 5' -64.5 NC_005259.1 + 28241 0.67 0.30721
Target:  5'- cGGCGGGGUGGucgaucacgauCCauugcccgaaaccguCGGCUCuGCCGAuguaGGCc -3'
miRNA:   3'- -UCGCUCCACC-----------GG---------------GCCGAG-CGGCU----CCG- -5'
23508 5' -64.5 NC_005259.1 + 45488 0.67 0.3044
Target:  5'- uGGCcgcuGGUGGCCUuGgUCGCUGuGGCc -3'
miRNA:   3'- -UCGcu--CCACCGGGcCgAGCGGCuCCG- -5'
23508 5' -64.5 NC_005259.1 + 27992 0.67 0.297463
Target:  5'- ---uGGGUGGUgCGGg-UGCCGGGGCg -3'
miRNA:   3'- ucgcUCCACCGgGCCgaGCGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 26807 0.67 0.297463
Target:  5'- cGCccGGuUGGCcgguaCCGGCgguggUGCCGGGGCg -3'
miRNA:   3'- uCGcuCC-ACCG-----GGCCGa----GCGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 27476 0.67 0.29609
Target:  5'- gGGcCGGGGUcGGUgUGGCcaccgccccacgCGCCGAGGUc -3'
miRNA:   3'- -UC-GCUCCA-CCGgGCCGa-----------GCGGCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.