miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23508 5' -64.5 NC_005259.1 + 2104 0.76 0.068276
Target:  5'- cGGCGAGGccaauUGGCacacGCUCGCCGAGGUc -3'
miRNA:   3'- -UCGCUCC-----ACCGggc-CGAGCGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 2203 0.66 0.355642
Target:  5'- cGGCaAGGUGcugcgcaccgagcGCCCGGcCUCGCCauuugucGGCg -3'
miRNA:   3'- -UCGcUCCAC-------------CGGGCC-GAGCGGcu-----CCG- -5'
23508 5' -64.5 NC_005259.1 + 6209 0.66 0.340185
Target:  5'- gAGCGGGGUGaGCC--GCcgCGCCGAcaccgugaccgugGGCg -3'
miRNA:   3'- -UCGCUCCAC-CGGgcCGa-GCGGCU-------------CCG- -5'
23508 5' -64.5 NC_005259.1 + 6406 0.69 0.197784
Target:  5'- aGGCGGugcccugauGUGGCCCGacCUCGCCGAugucGGCa -3'
miRNA:   3'- -UCGCUc--------CACCGGGCc-GAGCGGCU----CCG- -5'
23508 5' -64.5 NC_005259.1 + 7683 0.68 0.262739
Target:  5'- cGUGGGGUGGCCCGuacGUcugcaccaccaucgUCuggGCCGAGGg -3'
miRNA:   3'- uCGCUCCACCGGGC---CG--------------AG---CGGCUCCg -5'
23508 5' -64.5 NC_005259.1 + 8431 0.66 0.348625
Target:  5'- uGCGAugcucguugccGGUGGUCuCGGUgugGUCGAGGUa -3'
miRNA:   3'- uCGCU-----------CCACCGG-GCCGag-CGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 9048 0.67 0.283956
Target:  5'- uGCGGGGcGGUaaCCGGCUCGgUGGucauGGCc -3'
miRNA:   3'- uCGCUCCaCCG--GGCCGAGCgGCU----CCG- -5'
23508 5' -64.5 NC_005259.1 + 20456 0.67 0.290648
Target:  5'- gAGcCGGGGUGGCUCGGaugacCGCCGucGa -3'
miRNA:   3'- -UC-GCUCCACCGGGCCga---GCGGCucCg -5'
23508 5' -64.5 NC_005259.1 + 20944 0.75 0.083159
Target:  5'- gGGUGGGGUGGCacgucuacuacacgCGGUaUCGCCGGGGUg -3'
miRNA:   3'- -UCGCUCCACCGg-------------GCCG-AGCGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 23287 0.66 0.310751
Target:  5'- gGGCGcGGUGGUuggguaucgggguCCGGCgcggucggugUCGCCGAGcCg -3'
miRNA:   3'- -UCGCuCCACCG-------------GGCCG----------AGCGGCUCcG- -5'
23508 5' -64.5 NC_005259.1 + 23347 0.69 0.218251
Target:  5'- gGGCucGAGGcuGCCUgcgaGGC-CGCCGAGGCa -3'
miRNA:   3'- -UCG--CUCCacCGGG----CCGaGCGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 24121 0.7 0.18401
Target:  5'- gGGCGGGGacuacaccgccgccGCCCuGCUCGCCGAGuuGCg -3'
miRNA:   3'- -UCGCUCCac------------CGGGcCGAGCGGCUC--CG- -5'
23508 5' -64.5 NC_005259.1 + 24810 0.67 0.290648
Target:  5'- -cCGAGGUGcCCCGGCaCGCCGugcccGCa -3'
miRNA:   3'- ucGCUCCACcGGGCCGaGCGGCuc---CG- -5'
23508 5' -64.5 NC_005259.1 + 25941 0.68 0.25232
Target:  5'- gAGCGcacgccGGU-GCCCGGCcCGCCGAcGCc -3'
miRNA:   3'- -UCGCu-----CCAcCGGGCCGaGCGGCUcCG- -5'
23508 5' -64.5 NC_005259.1 + 26807 0.67 0.297463
Target:  5'- cGCccGGuUGGCcgguaCCGGCgguggUGCCGGGGCg -3'
miRNA:   3'- uCGcuCC-ACCG-----GGCCGa----GCGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 27476 0.67 0.29609
Target:  5'- gGGcCGGGGUcGGUgUGGCcaccgccccacgCGCCGAGGUc -3'
miRNA:   3'- -UC-GCUCCA-CCGgGCCGa-----------GCGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 27992 0.67 0.297463
Target:  5'- ---uGGGUGGUgCGGg-UGCCGGGGCg -3'
miRNA:   3'- ucgcUCCACCGgGCCgaGCGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 28241 0.67 0.30721
Target:  5'- cGGCGGGGUGGucgaucacgauCCauugcccgaaaccguCGGCUCuGCCGAuguaGGCc -3'
miRNA:   3'- -UCGCUCCACC-----------GG---------------GCCGAG-CGGCU----CCG- -5'
23508 5' -64.5 NC_005259.1 + 30816 0.73 0.10164
Target:  5'- gAGUcGGGUaGUCCGGCgCGCCGAGGUc -3'
miRNA:   3'- -UCGcUCCAcCGGGCCGaGCGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 31079 0.67 0.277387
Target:  5'- cGGCGAGGUu-CCCGaGCgCGUCGGGGa -3'
miRNA:   3'- -UCGCUCCAccGGGC-CGaGCGGCUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.