miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23508 5' -64.5 NC_005259.1 + 32490 0.68 0.264613
Target:  5'- cGCGAGGUGGUucuguaugaacaCCGuGagguaGUCGAGGCg -3'
miRNA:   3'- uCGCUCCACCG------------GGC-Cgag--CGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 32900 0.7 0.183551
Target:  5'- gGGCGAgGGUGagccaCCCGGCcCGCUcGGGCg -3'
miRNA:   3'- -UCGCU-CCACc----GGGCCGaGCGGcUCCG- -5'
23508 5' -64.5 NC_005259.1 + 33362 0.67 0.278038
Target:  5'- gGGCGAGGUcaugacucuccuaCCGGUcCGCCGAGcGCg -3'
miRNA:   3'- -UCGCUCCAccg----------GGCCGaGCGGCUC-CG- -5'
23508 5' -64.5 NC_005259.1 + 35656 0.66 0.341708
Target:  5'- uGGCGAgGGUGGCCagcgCGGUgguggugcacagcgaCGCCGugcccGGCg -3'
miRNA:   3'- -UCGCU-CCACCGG----GCCGa--------------GCGGCu----CCG- -5'
23508 5' -64.5 NC_005259.1 + 36412 0.66 0.348625
Target:  5'- gAGCGccucaaGGGUcauGGUCUGcGCagcgUCGCCGAGGUc -3'
miRNA:   3'- -UCGC------UCCA---CCGGGC-CG----AGCGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 37760 0.69 0.212971
Target:  5'- cAGCGcGGUGGCCCcuGCggGCaCGAGcGCa -3'
miRNA:   3'- -UCGCuCCACCGGGc-CGagCG-GCUC-CG- -5'
23508 5' -64.5 NC_005259.1 + 42260 0.66 0.311462
Target:  5'- uGUGAGGUGGUCa----CGUCGAGGCc -3'
miRNA:   3'- uCGCUCCACCGGgccgaGCGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 42917 0.66 0.340946
Target:  5'- cGUu-GGUGGCCUugagcaugaGGCccUCGCCGuGGGCg -3'
miRNA:   3'- uCGcuCCACCGGG---------CCG--AGCGGC-UCCG- -5'
23508 5' -64.5 NC_005259.1 + 45488 0.67 0.3044
Target:  5'- uGGCcgcuGGUGGCCUuGgUCGCUGuGGCc -3'
miRNA:   3'- -UCGcu--CCACCGGGcCgAGCGGCuCCG- -5'
23508 5' -64.5 NC_005259.1 + 46676 0.66 0.318648
Target:  5'- cGGCGAGcucGGCCUGaGC-CGCCGccGCg -3'
miRNA:   3'- -UCGCUCca-CCGGGC-CGaGCGGCucCG- -5'
23508 5' -64.5 NC_005259.1 + 47057 0.66 0.347852
Target:  5'- gAGCGuguuGGUGaGCgaGGCgagCGCCGAgacgaugGGCa -3'
miRNA:   3'- -UCGCu---CCAC-CGggCCGa--GCGGCU-------CCG- -5'
23508 5' -64.5 NC_005259.1 + 47887 0.67 0.29268
Target:  5'- uGGCcGGGUcagcgucGGCUCguugagcgccuugauGGCgUCGCCGAGGCc -3'
miRNA:   3'- -UCGcUCCA-------CCGGG---------------CCG-AGCGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 48051 0.66 0.340946
Target:  5'- ----cGGUGGCCaCGGCggguagCGCCGccGCg -3'
miRNA:   3'- ucgcuCCACCGG-GCCGa-----GCGGCucCG- -5'
23508 5' -64.5 NC_005259.1 + 50374 0.76 0.063003
Target:  5'- cGGCGAGaaacucGGCCCacgugucgcGGCUCGCCGAGcGCg -3'
miRNA:   3'- -UCGCUCca----CCGGG---------CCGAGCGGCUC-CG- -5'
23508 5' -64.5 NC_005259.1 + 53588 0.68 0.229148
Target:  5'- cGUGAGGUGuuCCuuuuuGCUCGUCGGGGUc -3'
miRNA:   3'- uCGCUCCACcgGGc----CGAGCGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 54704 0.71 0.142463
Target:  5'- aGGCG-GGUGGCCUcagccugguacaGGacauaGCCGAGGCu -3'
miRNA:   3'- -UCGCuCCACCGGG------------CCgag--CGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 56405 0.66 0.311462
Target:  5'- -uCGAuGGU-GCCCGGCcCGCCGAGcucaaGCa -3'
miRNA:   3'- ucGCU-CCAcCGGGCCGaGCGGCUC-----CG- -5'
23508 5' -64.5 NC_005259.1 + 56701 0.71 0.142463
Target:  5'- uGCGAGGUGGCCacgauGGUgUCcCCGAGcGCg -3'
miRNA:   3'- uCGCUCCACCGGg----CCG-AGcGGCUC-CG- -5'
23508 5' -64.5 NC_005259.1 + 57445 0.67 0.270939
Target:  5'- cGGCGAGGuUGGUgcgacgcugCGGCagGCCGGuGGCa -3'
miRNA:   3'- -UCGCUCC-ACCGg--------GCCGagCGGCU-CCG- -5'
23508 5' -64.5 NC_005259.1 + 58691 0.69 0.201241
Target:  5'- cGCGGGGUcGGCUCGucGCcgccgccgucaccaUCGCCGGGGg -3'
miRNA:   3'- uCGCUCCA-CCGGGC--CG--------------AGCGGCUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.