miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23508 5' -64.5 NC_005259.1 + 57445 0.67 0.270939
Target:  5'- cGGCGAGGuUGGUgcgacgcugCGGCagGCCGGuGGCa -3'
miRNA:   3'- -UCGCUCC-ACCGg--------GCCGagCGGCU-CCG- -5'
23508 5' -64.5 NC_005259.1 + 31079 0.67 0.277387
Target:  5'- cGGCGAGGUu-CCCGaGCgCGUCGGGGa -3'
miRNA:   3'- -UCGCUCCAccGGGC-CGaGCGGCUCCg -5'
23508 5' -64.5 NC_005259.1 + 33362 0.67 0.278038
Target:  5'- gGGCGAGGUcaugacucuccuaCCGGUcCGCCGAGcGCg -3'
miRNA:   3'- -UCGCUCCAccg----------GGCCGaGCGGCUC-CG- -5'
23508 5' -64.5 NC_005259.1 + 9048 0.67 0.283956
Target:  5'- uGCGGGGcGGUaaCCGGCUCGgUGGucauGGCc -3'
miRNA:   3'- uCGCUCCaCCG--GGCCGAGCgGCU----CCG- -5'
23508 5' -64.5 NC_005259.1 + 64766 0.67 0.290648
Target:  5'- cGCGAcGGUGcGCCuCGGCggccCGCUGcgacuGGCu -3'
miRNA:   3'- uCGCU-CCAC-CGG-GCCGa---GCGGCu----CCG- -5'
23508 5' -64.5 NC_005259.1 + 24810 0.67 0.290648
Target:  5'- -cCGAGGUGcCCCGGCaCGCCGugcccGCa -3'
miRNA:   3'- ucGCUCCACcGGGCCGaGCGGCuc---CG- -5'
23508 5' -64.5 NC_005259.1 + 20456 0.67 0.290648
Target:  5'- gAGcCGGGGUGGCUCGGaugacCGCCGucGa -3'
miRNA:   3'- -UC-GCUCCACCGGGCCga---GCGGCucCg -5'
23508 5' -64.5 NC_005259.1 + 47887 0.67 0.29268
Target:  5'- uGGCcGGGUcagcgucGGCUCguugagcgccuugauGGCgUCGCCGAGGCc -3'
miRNA:   3'- -UCGcUCCA-------CCGGG---------------CCG-AGCGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 27476 0.67 0.29609
Target:  5'- gGGcCGGGGUcGGUgUGGCcaccgccccacgCGCCGAGGUc -3'
miRNA:   3'- -UC-GCUCCA-CCGgGCCGa-----------GCGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 27992 0.67 0.297463
Target:  5'- ---uGGGUGGUgCGGg-UGCCGGGGCg -3'
miRNA:   3'- ucgcUCCACCGgGCCgaGCGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 26807 0.67 0.297463
Target:  5'- cGCccGGuUGGCcgguaCCGGCgguggUGCCGGGGCg -3'
miRNA:   3'- uCGcuCC-ACCG-----GGCCGa----GCGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 45488 0.67 0.3044
Target:  5'- uGGCcgcuGGUGGCCUuGgUCGCUGuGGCc -3'
miRNA:   3'- -UCGcu--CCACCGGGcCgAGCGGCuCCG- -5'
23508 5' -64.5 NC_005259.1 + 28241 0.67 0.30721
Target:  5'- cGGCGGGGUGGucgaucacgauCCauugcccgaaaccguCGGCUCuGCCGAuguaGGCc -3'
miRNA:   3'- -UCGCUCCACC-----------GG---------------GCCGAG-CGGCU----CCG- -5'
23508 5' -64.5 NC_005259.1 + 23287 0.66 0.310751
Target:  5'- gGGCGcGGUGGUuggguaucgggguCCGGCgcggucggugUCGCCGAGcCg -3'
miRNA:   3'- -UCGCuCCACCG-------------GGCCG----------AGCGGCUCcG- -5'
23508 5' -64.5 NC_005259.1 + 42260 0.66 0.311462
Target:  5'- uGUGAGGUGGUCa----CGUCGAGGCc -3'
miRNA:   3'- uCGCUCCACCGGgccgaGCGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 56405 0.66 0.311462
Target:  5'- -uCGAuGGU-GCCCGGCcCGCCGAGcucaaGCa -3'
miRNA:   3'- ucGCU-CCAcCGGGCCGaGCGGCUC-----CG- -5'
23508 5' -64.5 NC_005259.1 + 46676 0.66 0.318648
Target:  5'- cGGCGAGcucGGCCUGaGC-CGCCGccGCg -3'
miRNA:   3'- -UCGCUCca-CCGGGC-CGaGCGGCucCG- -5'
23508 5' -64.5 NC_005259.1 + 60053 0.66 0.32522
Target:  5'- -uCGGGGUcuucucgggcucaGGCUcgggCGGCUCGCCGAcuuucucgauGGCg -3'
miRNA:   3'- ucGCUCCA-------------CCGG----GCCGAGCGGCU----------CCG- -5'
23508 5' -64.5 NC_005259.1 + 63658 0.66 0.326694
Target:  5'- uGGCcGGGacgccggacaccucgGGCaCCGGCgCGCCGGGGa -3'
miRNA:   3'- -UCGcUCCa--------------CCG-GGCCGaGCGGCUCCg -5'
23508 5' -64.5 NC_005259.1 + 6209 0.66 0.340185
Target:  5'- gAGCGGGGUGaGCC--GCcgCGCCGAcaccgugaccgugGGCg -3'
miRNA:   3'- -UCGCUCCAC-CGGgcCGa-GCGGCU-------------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.