miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23508 5' -64.5 NC_005259.1 + 27476 0.67 0.29609
Target:  5'- gGGcCGGGGUcGGUgUGGCcaccgccccacgCGCCGAGGUc -3'
miRNA:   3'- -UC-GCUCCA-CCGgGCCGa-----------GCGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 47887 0.67 0.29268
Target:  5'- uGGCcGGGUcagcgucGGCUCguugagcgccuugauGGCgUCGCCGAGGCc -3'
miRNA:   3'- -UCGcUCCA-------CCGGG---------------CCG-AGCGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 64766 0.67 0.290648
Target:  5'- cGCGAcGGUGcGCCuCGGCggccCGCUGcgacuGGCu -3'
miRNA:   3'- uCGCU-CCAC-CGG-GCCGa---GCGGCu----CCG- -5'
23508 5' -64.5 NC_005259.1 + 24810 0.67 0.290648
Target:  5'- -cCGAGGUGcCCCGGCaCGCCGugcccGCa -3'
miRNA:   3'- ucGCUCCACcGGGCCGaGCGGCuc---CG- -5'
23508 5' -64.5 NC_005259.1 + 9048 0.67 0.283956
Target:  5'- uGCGGGGcGGUaaCCGGCUCGgUGGucauGGCc -3'
miRNA:   3'- uCGCUCCaCCG--GGCCGAGCgGCU----CCG- -5'
23508 5' -64.5 NC_005259.1 + 33362 0.67 0.278038
Target:  5'- gGGCGAGGUcaugacucuccuaCCGGUcCGCCGAGcGCg -3'
miRNA:   3'- -UCGCUCCAccg----------GGCCGaGCGGCUC-CG- -5'
23508 5' -64.5 NC_005259.1 + 31079 0.67 0.277387
Target:  5'- cGGCGAGGUu-CCCGaGCgCGUCGGGGa -3'
miRNA:   3'- -UCGCUCCAccGGGC-CGaGCGGCUCCg -5'
23508 5' -64.5 NC_005259.1 + 57445 0.67 0.270939
Target:  5'- cGGCGAGGuUGGUgcgacgcugCGGCagGCCGGuGGCa -3'
miRNA:   3'- -UCGCUCC-ACCGg--------GCCGagCGGCU-CCG- -5'
23508 5' -64.5 NC_005259.1 + 32490 0.68 0.264613
Target:  5'- cGCGAGGUGGUucuguaugaacaCCGuGagguaGUCGAGGCg -3'
miRNA:   3'- uCGCUCCACCG------------GGC-Cgag--CGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 7683 0.68 0.262739
Target:  5'- cGUGGGGUGGCCCGuacGUcugcaccaccaucgUCuggGCCGAGGg -3'
miRNA:   3'- uCGCUCCACCGGGC---CG--------------AG---CGGCUCCg -5'
23508 5' -64.5 NC_005259.1 + 25941 0.68 0.25232
Target:  5'- gAGCGcacgccGGU-GCCCGGCcCGCCGAcGCc -3'
miRNA:   3'- -UCGCu-----CCAcCGGGCCGaGCGGCUcCG- -5'
23508 5' -64.5 NC_005259.1 + 61603 0.68 0.245762
Target:  5'- cGGUGGGGUcGGCggggaacagcagaCCGGCacCGCCGAcGGUg -3'
miRNA:   3'- -UCGCUCCA-CCG-------------GGCCGa-GCGGCU-CCG- -5'
23508 5' -64.5 NC_005259.1 + 53588 0.68 0.229148
Target:  5'- cGUGAGGUGuuCCuuuuuGCUCGUCGGGGUc -3'
miRNA:   3'- uCGCUCCACcgGGc----CGAGCGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 64943 0.69 0.202738
Target:  5'- cGCGAgGGUGGCCgGGUU-GUCGAuGGUc -3'
miRNA:   3'- uCGCU-CCACCGGgCCGAgCGGCU-CCG- -5'
23508 5' -64.5 NC_005259.1 + 6406 0.69 0.197784
Target:  5'- aGGCGGugcccugauGUGGCCCGacCUCGCCGAugucGGCa -3'
miRNA:   3'- -UCGCUc--------CACCGGGCc-GAGCGGCU----CCG- -5'
23508 5' -64.5 NC_005259.1 + 58691 0.69 0.201241
Target:  5'- cGCGGGGUcGGCUCGucGCcgccgccgucaccaUCGCCGGGGg -3'
miRNA:   3'- uCGCUCCA-CCGGGC--CG--------------AGCGGCUCCg -5'
23508 5' -64.5 NC_005259.1 + 37760 0.69 0.212971
Target:  5'- cAGCGcGGUGGCCCcuGCggGCaCGAGcGCa -3'
miRNA:   3'- -UCGCuCCACCGGGc-CGagCG-GCUC-CG- -5'
23508 5' -64.5 NC_005259.1 + 23347 0.69 0.218251
Target:  5'- gGGCucGAGGcuGCCUgcgaGGC-CGCCGAGGCa -3'
miRNA:   3'- -UCG--CUCCacCGGG----CCGaGCGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 24121 0.7 0.18401
Target:  5'- gGGCGGGGacuacaccgccgccGCCCuGCUCGCCGAGuuGCg -3'
miRNA:   3'- -UCGCUCCac------------CGGGcCGAGCGGCUC--CG- -5'
23508 5' -64.5 NC_005259.1 + 32900 0.7 0.183551
Target:  5'- gGGCGAgGGUGagccaCCCGGCcCGCUcGGGCg -3'
miRNA:   3'- -UCGCU-CCACc----GGGCCGaGCGGcUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.