miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23508 5' -64.5 NC_005259.1 + 63860 0.79 0.036688
Target:  5'- cGGCGAGGUGG-CCGGCUgGCCuugcguGGGCg -3'
miRNA:   3'- -UCGCUCCACCgGGCCGAgCGGc-----UCCG- -5'
23508 5' -64.5 NC_005259.1 + 50374 0.76 0.063003
Target:  5'- cGGCGAGaaacucGGCCCacgugucgcGGCUCGCCGAGcGCg -3'
miRNA:   3'- -UCGCUCca----CCGGG---------CCGAGCGGCUC-CG- -5'
23508 5' -64.5 NC_005259.1 + 2104 0.76 0.068276
Target:  5'- cGGCGAGGccaauUGGCacacGCUCGCCGAGGUc -3'
miRNA:   3'- -UCGCUCC-----ACCGggc-CGAGCGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 20944 0.75 0.083159
Target:  5'- gGGUGGGGUGGCacgucuacuacacgCGGUaUCGCCGGGGUg -3'
miRNA:   3'- -UCGCUCCACCGg-------------GCCG-AGCGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 30816 0.73 0.10164
Target:  5'- gAGUcGGGUaGUCCGGCgCGCCGAGGUc -3'
miRNA:   3'- -UCGcUCCAcCGGGCCGaGCGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 54704 0.71 0.142463
Target:  5'- aGGCG-GGUGGCCUcagccugguacaGGacauaGCCGAGGCu -3'
miRNA:   3'- -UCGCuCCACCGGG------------CCgag--CGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 56701 0.71 0.142463
Target:  5'- uGCGAGGUGGCCacgauGGUgUCcCCGAGcGCg -3'
miRNA:   3'- uCGCUCCACCGGg----CCG-AGcGGCUC-CG- -5'
23508 5' -64.5 NC_005259.1 + 65430 0.7 0.171955
Target:  5'- aAGCGA--UGGCCUGaGCUCGCaccugcgaacaacaaCGAGGCc -3'
miRNA:   3'- -UCGCUccACCGGGC-CGAGCG---------------GCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 32900 0.7 0.183551
Target:  5'- gGGCGAgGGUGagccaCCCGGCcCGCUcGGGCg -3'
miRNA:   3'- -UCGCU-CCACc----GGGCCGaGCGGcUCCG- -5'
23508 5' -64.5 NC_005259.1 + 24121 0.7 0.18401
Target:  5'- gGGCGGGGacuacaccgccgccGCCCuGCUCGCCGAGuuGCg -3'
miRNA:   3'- -UCGCUCCac------------CGGGcCGAGCGGCUC--CG- -5'
23508 5' -64.5 NC_005259.1 + 6406 0.69 0.197784
Target:  5'- aGGCGGugcccugauGUGGCCCGacCUCGCCGAugucGGCa -3'
miRNA:   3'- -UCGCUc--------CACCGGGCc-GAGCGGCU----CCG- -5'
23508 5' -64.5 NC_005259.1 + 58691 0.69 0.201241
Target:  5'- cGCGGGGUcGGCUCGucGCcgccgccgucaccaUCGCCGGGGg -3'
miRNA:   3'- uCGCUCCA-CCGGGC--CG--------------AGCGGCUCCg -5'
23508 5' -64.5 NC_005259.1 + 64943 0.69 0.202738
Target:  5'- cGCGAgGGUGGCCgGGUU-GUCGAuGGUc -3'
miRNA:   3'- uCGCU-CCACCGGgCCGAgCGGCU-CCG- -5'
23508 5' -64.5 NC_005259.1 + 37760 0.69 0.212971
Target:  5'- cAGCGcGGUGGCCCcuGCggGCaCGAGcGCa -3'
miRNA:   3'- -UCGCuCCACCGGGc-CGagCG-GCUC-CG- -5'
23508 5' -64.5 NC_005259.1 + 23347 0.69 0.218251
Target:  5'- gGGCucGAGGcuGCCUgcgaGGC-CGCCGAGGCa -3'
miRNA:   3'- -UCG--CUCCacCGGG----CCGaGCGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 53588 0.68 0.229148
Target:  5'- cGUGAGGUGuuCCuuuuuGCUCGUCGGGGUc -3'
miRNA:   3'- uCGCUCCACcgGGc----CGAGCGGCUCCG- -5'
23508 5' -64.5 NC_005259.1 + 61603 0.68 0.245762
Target:  5'- cGGUGGGGUcGGCggggaacagcagaCCGGCacCGCCGAcGGUg -3'
miRNA:   3'- -UCGCUCCA-CCG-------------GGCCGa-GCGGCU-CCG- -5'
23508 5' -64.5 NC_005259.1 + 25941 0.68 0.25232
Target:  5'- gAGCGcacgccGGU-GCCCGGCcCGCCGAcGCc -3'
miRNA:   3'- -UCGCu-----CCAcCGGGCCGaGCGGCUcCG- -5'
23508 5' -64.5 NC_005259.1 + 7683 0.68 0.262739
Target:  5'- cGUGGGGUGGCCCGuacGUcugcaccaccaucgUCuggGCCGAGGg -3'
miRNA:   3'- uCGCUCCACCGGGC---CG--------------AG---CGGCUCCg -5'
23508 5' -64.5 NC_005259.1 + 32490 0.68 0.264613
Target:  5'- cGCGAGGUGGUucuguaugaacaCCGuGagguaGUCGAGGCg -3'
miRNA:   3'- uCGCUCCACCG------------GGC-Cgag--CGGCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.