Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23510 | 3' | -58.5 | NC_005259.1 | + | 56179 | 0.68 | 0.528236 |
Target: 5'- cACGGUGCCGACAUaCGcguuGCGcgagcugugcucaAGGaUCGGu -3' miRNA: 3'- cUGCCACGGCUGUA-GC----CGC-------------UCC-AGCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 39416 | 0.68 | 0.519203 |
Target: 5'- aGGCGGUGCCgGACAccgucaaugagUCGaGCGuGaUCGGa -3' miRNA: 3'- -CUGCCACGG-CUGU-----------AGC-CGCuCcAGCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 67208 | 0.68 | 0.499358 |
Target: 5'- -----cGCCGcUGUCGGCGGGGUCGa -3' miRNA: 3'- cugccaCGGCuGUAGCCGCUCCAGCc -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 66664 | 0.68 | 0.498375 |
Target: 5'- cGGCGGUGCUGcgaugcuCAUCGuGCcgcccauGAGGUCGa -3' miRNA: 3'- -CUGCCACGGCu------GUAGC-CG-------CUCCAGCc -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 32637 | 0.69 | 0.489562 |
Target: 5'- -uCGGUacGCCG-CAUUGGcCGGGGUgGGg -3' miRNA: 3'- cuGCCA--CGGCuGUAGCC-GCUCCAgCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 68802 | 0.69 | 0.476001 |
Target: 5'- gGGCGGUGUCGgugcccgguacauGCucucggucaaagcaGUCGGUGAGGUgGGc -3' miRNA: 3'- -CUGCCACGGC-------------UG--------------UAGCCGCUCCAgCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 41638 | 0.69 | 0.470247 |
Target: 5'- uGGCGGUGCCGgucugcggGCGcUCGGUGAG--CGGg -3' miRNA: 3'- -CUGCCACGGC--------UGU-AGCCGCUCcaGCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 41774 | 0.69 | 0.451327 |
Target: 5'- cGCGaacaacaCCGGCAUCGGCGAGcaGUCGGc -3' miRNA: 3'- cUGCcac----GGCUGUAGCCGCUC--CAGCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 2082 | 0.69 | 0.451327 |
Target: 5'- gGGCGGgccUGCuCGAuuuCAUCGGCGAGGccaaUUGGc -3' miRNA: 3'- -CUGCC---ACG-GCU---GUAGCCGCUCC----AGCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 22988 | 0.69 | 0.442025 |
Target: 5'- -cCGGUGUCGACGcCGcCGAGGUCa- -3' miRNA: 3'- cuGCCACGGCUGUaGCcGCUCCAGcc -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 67238 | 0.7 | 0.432832 |
Target: 5'- cGGCGGUGuaGGgGUUGaGCGGGGccUCGGg -3' miRNA: 3'- -CUGCCACggCUgUAGC-CGCUCC--AGCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 28641 | 0.7 | 0.414786 |
Target: 5'- -cCGGUGCCGACAcCGcCGAGGcCGc -3' miRNA: 3'- cuGCCACGGCUGUaGCcGCUCCaGCc -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 58941 | 0.7 | 0.405938 |
Target: 5'- cGCGGUGgCaGCGUCGGCcuuggccagcAGGUCGGg -3' miRNA: 3'- cUGCCACgGcUGUAGCCGc---------UCCAGCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 14076 | 0.7 | 0.405938 |
Target: 5'- cGGCGGUGgCCuACGUgCGcaGCGAGGUCGa -3' miRNA: 3'- -CUGCCAC-GGcUGUA-GC--CGCUCCAGCc -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 28217 | 0.7 | 0.39721 |
Target: 5'- aGACGGUcguGCCGccacCGUCGGCGGcgggguGGUCGa -3' miRNA: 3'- -CUGCCA---CGGCu---GUAGCCGCU------CCAGCc -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 28941 | 0.7 | 0.388603 |
Target: 5'- aGGCGGcacgauccugcGCCG-CAUCGcCGAGGUCGGu -3' miRNA: 3'- -CUGCCa----------CGGCuGUAGCcGCUCCAGCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 60599 | 0.7 | 0.387749 |
Target: 5'- --nGGUGCCGuCAUcgagcagcacaggCGGCGAGGUgUGGa -3' miRNA: 3'- cugCCACGGCuGUA-------------GCCGCUCCA-GCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 47587 | 0.71 | 0.38012 |
Target: 5'- cGGCGGUguuGCCGAauaucugGUCGGCGAGGcugaGGu -3' miRNA: 3'- -CUGCCA---CGGCUg------UAGCCGCUCCag--CC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 61012 | 0.71 | 0.363528 |
Target: 5'- cGACGGUGagcuuccacUCGGUggCGGCGAGGUCGa -3' miRNA: 3'- -CUGCCAC---------GGCUGuaGCCGCUCCAGCc -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 49634 | 0.73 | 0.281478 |
Target: 5'- cGGCGGcaGCCG-CGUCGGCGAuGG-CGGc -3' miRNA: 3'- -CUGCCa-CGGCuGUAGCCGCU-CCaGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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