miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23510 5' -50.2 NC_005259.1 + 67153 0.66 0.967477
Target:  5'- aGCCGCUugUCGAugGUGGCG---GCCAu -3'
miRNA:   3'- gUGGCGG--AGCUuuUACUGCaacUGGU- -5'
23510 5' -50.2 NC_005259.1 + 48627 0.66 0.967477
Target:  5'- gCACUGCCUCGccGA-GACGggcuGCCAg -3'
miRNA:   3'- -GUGGCGGAGCuuUUaCUGCaac-UGGU- -5'
23510 5' -50.2 NC_005259.1 + 29668 0.66 0.967477
Target:  5'- gACCGCCUCGuugccgGACGc--GCCGc -3'
miRNA:   3'- gUGGCGGAGCuuuua-CUGCaacUGGU- -5'
23510 5' -50.2 NC_005259.1 + 19719 0.66 0.967477
Target:  5'- uGCCGCCgaggUGAuc--GACGggGACUAg -3'
miRNA:   3'- gUGGCGGa---GCUuuuaCUGCaaCUGGU- -5'
23510 5' -50.2 NC_005259.1 + 28660 0.66 0.967477
Target:  5'- gGCCGCCgucaaGAucAUGACGU-GGCUc -3'
miRNA:   3'- gUGGCGGag---CUuuUACUGCAaCUGGu -5'
23510 5' -50.2 NC_005259.1 + 43442 0.66 0.963954
Target:  5'- gGCUGCgCUCGAugagacccgAGGUGuCGUUGAgCAa -3'
miRNA:   3'- gUGGCG-GAGCU---------UUUACuGCAACUgGU- -5'
23510 5' -50.2 NC_005259.1 + 67389 0.66 0.963954
Target:  5'- aCGCUugGCCUCGggGGUGuCacgGGCCGa -3'
miRNA:   3'- -GUGG--CGGAGCuuUUACuGcaaCUGGU- -5'
23510 5' -50.2 NC_005259.1 + 20724 0.66 0.956127
Target:  5'- -cCCGCCgCGcGAAAUGACGUauUGGuCCGg -3'
miRNA:   3'- guGGCGGaGC-UUUUACUGCA--ACU-GGU- -5'
23510 5' -50.2 NC_005259.1 + 41740 0.66 0.956127
Target:  5'- aCACCGCCUCGAc----ACGcucGACCu -3'
miRNA:   3'- -GUGGCGGAGCUuuuacUGCaa-CUGGu -5'
23510 5' -50.2 NC_005259.1 + 29914 0.66 0.956127
Target:  5'- gGCUGCC-CGAGAccAUcGACGcgUGGCCGc -3'
miRNA:   3'- gUGGCGGaGCUUU--UA-CUGCa-ACUGGU- -5'
23510 5' -50.2 NC_005259.1 + 38995 0.66 0.956127
Target:  5'- uGCCcaGCCUCGuuGAgcGCGgUGACCAg -3'
miRNA:   3'- gUGG--CGGAGCuuUUacUGCaACUGGU- -5'
23510 5' -50.2 NC_005259.1 + 32556 0.66 0.956127
Target:  5'- gGCCGCCccggcgagcgCGggGAUaGCGUUGGgCAg -3'
miRNA:   3'- gUGGCGGa---------GCuuUUAcUGCAACUgGU- -5'
23510 5' -50.2 NC_005259.1 + 26508 0.66 0.951809
Target:  5'- uCGCCGCCcggCGAGAAgaGCGcggugagcagcUUGGCCAc -3'
miRNA:   3'- -GUGGCGGa--GCUUUUacUGC-----------AACUGGU- -5'
23510 5' -50.2 NC_005259.1 + 55923 0.67 0.947217
Target:  5'- gACCGCUggucugcucggCGAGAccGAgGUUGACCc -3'
miRNA:   3'- gUGGCGGa----------GCUUUuaCUgCAACUGGu -5'
23510 5' -50.2 NC_005259.1 + 17463 0.67 0.931746
Target:  5'- cCACCGCCcacCGu-GGUGACGcccGGCCAu -3'
miRNA:   3'- -GUGGCGGa--GCuuUUACUGCaa-CUGGU- -5'
23510 5' -50.2 NC_005259.1 + 8311 0.67 0.931746
Target:  5'- aCGCCGCCUUGucGGAgcugccGACGgcGAUCAg -3'
miRNA:   3'- -GUGGCGGAGCu-UUUa-----CUGCaaCUGGU- -5'
23510 5' -50.2 NC_005259.1 + 66687 0.67 0.931186
Target:  5'- uGCCGCCcaugaggUCGAAAAUGGUGUcGugCAc -3'
miRNA:   3'- gUGGCGG-------AGCUUUUACUGCAaCugGU- -5'
23510 5' -50.2 NC_005259.1 + 13709 0.67 0.926018
Target:  5'- -cCCGCCUCGAcaccgacaaucgAGGUGcCGUgaUGGCCc -3'
miRNA:   3'- guGGCGGAGCU------------UUUACuGCA--ACUGGu -5'
23510 5' -50.2 NC_005259.1 + 46947 0.67 0.926018
Target:  5'- gCGCCGCCgaccgCGuuGAgcuUGUUGGCCAc -3'
miRNA:   3'- -GUGGCGGa----GCuuUUacuGCAACUGGU- -5'
23510 5' -50.2 NC_005259.1 + 42956 0.67 0.926018
Target:  5'- gGCCGCCguugUCGAAcggGAUGcCGggGAUCAu -3'
miRNA:   3'- gUGGCGG----AGCUU---UUACuGCaaCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.