miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23511 3' -54.8 NC_005259.1 + 41320 0.66 0.843924
Target:  5'- -gGUCGACcucgaaaagggCGGUGCCGUcggauACCACg- -3'
miRNA:   3'- ggCAGCUGua---------GCCAUGGCG-----UGGUGag -5'
23511 3' -54.8 NC_005259.1 + 63119 0.66 0.837097
Target:  5'- gCCGUCGAgGgUGGUgaggucguaGCCGCugUcCUCg -3'
miRNA:   3'- -GGCAGCUgUaGCCA---------UGGCGugGuGAG- -5'
23511 3' -54.8 NC_005259.1 + 3709 0.66 0.837097
Target:  5'- aCCGgCGACcucuUCcGUAuCCGCACC-CUCa -3'
miRNA:   3'- -GGCaGCUGu---AGcCAU-GGCGUGGuGAG- -5'
23511 3' -54.8 NC_005259.1 + 31624 0.66 0.837097
Target:  5'- uUGUCGcCAgcgCGuuGUACUGCGCCACg- -3'
miRNA:   3'- gGCAGCuGUa--GC--CAUGGCGUGGUGag -5'
23511 3' -54.8 NC_005259.1 + 36888 0.66 0.837097
Target:  5'- gCCGaCGACGcCGGUGagCGCcCCACUg -3'
miRNA:   3'- -GGCaGCUGUaGCCAUg-GCGuGGUGAg -5'
23511 3' -54.8 NC_005259.1 + 32826 0.66 0.82838
Target:  5'- gCCGUCGAUAUUGGUGuucuCC-CAgaACUCu -3'
miRNA:   3'- -GGCAGCUGUAGCCAU----GGcGUggUGAG- -5'
23511 3' -54.8 NC_005259.1 + 50276 0.66 0.82838
Target:  5'- gUCGUCGguggcgggaACGUC-GUGCaCGCucuGCCACUCg -3'
miRNA:   3'- -GGCAGC---------UGUAGcCAUG-GCG---UGGUGAG- -5'
23511 3' -54.8 NC_005259.1 + 11976 0.66 0.82838
Target:  5'- cCCGgCGAC--UGGUAUCGCugCAC-Ca -3'
miRNA:   3'- -GGCaGCUGuaGCCAUGGCGugGUGaG- -5'
23511 3' -54.8 NC_005259.1 + 42202 0.66 0.82838
Target:  5'- gCCGUCG-CGaUGGaugcccGCCGCGCCGC-Cg -3'
miRNA:   3'- -GGCAGCuGUaGCCa-----UGGCGUGGUGaG- -5'
23511 3' -54.8 NC_005259.1 + 3855 0.66 0.819467
Target:  5'- aCCGUCGACGcCGGUcgaGCGCCuCg- -3'
miRNA:   3'- -GGCAGCUGUaGCCAuggCGUGGuGag -5'
23511 3' -54.8 NC_005259.1 + 43890 0.66 0.819467
Target:  5'- gCCGcCGACAUUGc--CCGCGCCGgCUg -3'
miRNA:   3'- -GGCaGCUGUAGCcauGGCGUGGU-GAg -5'
23511 3' -54.8 NC_005259.1 + 68546 0.66 0.810367
Target:  5'- gCGUCGACAUCGGggugGuuGaGCCAaccgagguggacCUCg -3'
miRNA:   3'- gGCAGCUGUAGCCa---UggCgUGGU------------GAG- -5'
23511 3' -54.8 NC_005259.1 + 66863 0.66 0.801089
Target:  5'- aCCGaUCGGCcuuguUCGc-ACCGCGCCACg- -3'
miRNA:   3'- -GGC-AGCUGu----AGCcaUGGCGUGGUGag -5'
23511 3' -54.8 NC_005259.1 + 38929 0.66 0.801089
Target:  5'- aCGUCGGUGUugcugugccCGGUGCCGCuGCCGC-Cg -3'
miRNA:   3'- gGCAGCUGUA---------GCCAUGGCG-UGGUGaG- -5'
23511 3' -54.8 NC_005259.1 + 56249 0.66 0.801089
Target:  5'- aCGUUGGgAUCGGcgGCCuugaGCGCCGC-Cg -3'
miRNA:   3'- gGCAGCUgUAGCCa-UGG----CGUGGUGaG- -5'
23511 3' -54.8 NC_005259.1 + 61007 0.67 0.790691
Target:  5'- cCCGUCGACGgugagcuuccacUCGGUggcggcgaggucgACCGacggGCgGCUCa -3'
miRNA:   3'- -GGCAGCUGU------------AGCCA-------------UGGCg---UGgUGAG- -5'
23511 3' -54.8 NC_005259.1 + 8379 0.67 0.783008
Target:  5'- gCC-UCGGCAUCGGcgagagccucggcgaGCCGgGCCACcUCg -3'
miRNA:   3'- -GGcAGCUGUAGCCa--------------UGGCgUGGUG-AG- -5'
23511 3' -54.8 NC_005259.1 + 8129 0.67 0.782041
Target:  5'- -aGUCGGCuacgGGUGCCccGCGCC-CUCg -3'
miRNA:   3'- ggCAGCUGuag-CCAUGG--CGUGGuGAG- -5'
23511 3' -54.8 NC_005259.1 + 22637 0.67 0.77229
Target:  5'- uUCGcCG-CGUCGGUcgacGCCGCccACCACaUCg -3'
miRNA:   3'- -GGCaGCuGUAGCCA----UGGCG--UGGUG-AG- -5'
23511 3' -54.8 NC_005259.1 + 50500 0.67 0.771308
Target:  5'- gCCgGUCGAUGUgggCGGUgcGCUGCACCucgacgcGCUCg -3'
miRNA:   3'- -GG-CAGCUGUA---GCCA--UGGCGUGG-------UGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.