miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23513 5' -58.5 NC_005259.1 + 40761 0.66 0.650304
Target:  5'- aCGUCUGGUcgagcaucuGCUCGUCG--GCGAUGAc -3'
miRNA:   3'- gGCAGGCCG---------CGAGUAGUggCGCUGCU- -5'
23513 5' -58.5 NC_005259.1 + 41645 0.67 0.571372
Target:  5'- gCCGgucugCgGGCGCUCGgugagcgggaucugCACCGCGuGCGu -3'
miRNA:   3'- -GGCa----GgCCGCGAGUa-------------GUGGCGC-UGCu -5'
23513 5' -58.5 NC_005259.1 + 42446 0.67 0.598248
Target:  5'- gUGUUCGGCGUccaacaGUCGCCGacuaCGGCGAg -3'
miRNA:   3'- gGCAGGCCGCGag----UAGUGGC----GCUGCU- -5'
23513 5' -58.5 NC_005259.1 + 42502 0.66 0.639889
Target:  5'- cCCGUCCGGCGgUguggccagcagcCGUCcgGCCcCGAUGGg -3'
miRNA:   3'- -GGCAGGCCGCgA------------GUAG--UGGcGCUGCU- -5'
23513 5' -58.5 NC_005259.1 + 45518 0.68 0.546826
Target:  5'- aCCGcgCCGGUGUUgGcCGCCGUGGCu- -3'
miRNA:   3'- -GGCa-GGCCGCGAgUaGUGGCGCUGcu -5'
23513 5' -58.5 NC_005259.1 + 49609 0.67 0.56726
Target:  5'- aCC-UCgGGCaGCUCAUCAUCGUcaucGGCGGc -3'
miRNA:   3'- -GGcAGgCCG-CGAGUAGUGGCG----CUGCU- -5'
23513 5' -58.5 NC_005259.1 + 51113 0.68 0.516638
Target:  5'- uCUGUCCGGCagGCcaUCAgaUCACCGUcggGGCGGc -3'
miRNA:   3'- -GGCAGGCCG--CG--AGU--AGUGGCG---CUGCU- -5'
23513 5' -58.5 NC_005259.1 + 56077 0.74 0.248315
Target:  5'- aCCGUCgagcagauCGGUGCUCGUCggggccACCGCGugGc -3'
miRNA:   3'- -GGCAG--------GCCGCGAGUAG------UGGCGCugCu -5'
23513 5' -58.5 NC_005259.1 + 56566 0.68 0.557016
Target:  5'- -gGUUCGGUGaUCGUCgcgGCUGCGAUGAg -3'
miRNA:   3'- ggCAGGCCGCgAGUAG---UGGCGCUGCU- -5'
23513 5' -58.5 NC_005259.1 + 58970 0.73 0.293933
Target:  5'- -gGUCgGGCaGCUCGUCGgCGaCGGCGAg -3'
miRNA:   3'- ggCAGgCCG-CGAGUAGUgGC-GCUGCU- -5'
23513 5' -58.5 NC_005259.1 + 60595 0.66 0.650304
Target:  5'- -aGUCgGGUGC-CGUCAUCgagcagcacagGCGGCGAg -3'
miRNA:   3'- ggCAGgCCGCGaGUAGUGG-----------CGCUGCU- -5'
23513 5' -58.5 NC_005259.1 + 61746 0.75 0.208711
Target:  5'- gCGUCCGGCGag-AUCugUGCGGCGGc -3'
miRNA:   3'- gGCAGGCCGCgagUAGugGCGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.