Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23514 | 5' | -57.8 | NC_005259.1 | + | 52921 | 0.66 | 0.639685 |
Target: 5'- -cCGCCGAC--UCgaUGGCCugGUCGc -3' miRNA: 3'- gaGCGGCUGccAGa-ACCGGugCAGCu -5' |
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23514 | 5' | -57.8 | NC_005259.1 | + | 58836 | 0.67 | 0.608069 |
Target: 5'- cCUCGCCGcccuCGGUCUcacccucgGGCuCGcCGUCGu -3' miRNA: 3'- -GAGCGGCu---GCCAGAa-------CCG-GU-GCAGCu -5' |
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23514 | 5' | -57.8 | NC_005259.1 | + | 58913 | 0.73 | 0.304926 |
Target: 5'- gCUCGUCGGCGGUCUUGu---CGUCGGc -3' miRNA: 3'- -GAGCGGCUGCCAGAACcgguGCAGCU- -5' |
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23514 | 5' | -57.8 | NC_005259.1 | + | 58983 | 0.7 | 0.428295 |
Target: 5'- gUCGgCGACGGcgagCUUGGCCuuuucacCGUUGAg -3' miRNA: 3'- gAGCgGCUGCCa---GAACCGGu------GCAGCU- -5' |
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23514 | 5' | -57.8 | NC_005259.1 | + | 60294 | 0.67 | 0.608069 |
Target: 5'- aUCGUCGuCGGUgc-GGCCACGgacggCGAa -3' miRNA: 3'- gAGCGGCuGCCAgaaCCGGUGCa----GCU- -5' |
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23514 | 5' | -57.8 | NC_005259.1 | + | 60568 | 0.72 | 0.334972 |
Target: 5'- -gUGCCGACGGUCaggcGGCCcACGgCGAg -3' miRNA: 3'- gaGCGGCUGCCAGaa--CCGG-UGCaGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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