Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23514 | 5' | -57.8 | NC_005259.1 | + | 46554 | 0.66 | 0.650223 |
Target: 5'- gUCGCCGACcgcgccuauGGUC---GCgGCGUCGAc -3' miRNA: 3'- gAGCGGCUG---------CCAGaacCGgUGCAGCU- -5' |
|||||||
23514 | 5' | -57.8 | NC_005259.1 | + | 33902 | 0.66 | 0.669147 |
Target: 5'- -cCGCgCGACGGgccgagaccGGCCACGgugCGAg -3' miRNA: 3'- gaGCG-GCUGCCagaa-----CCGGUGCa--GCU- -5' |
|||||||
23514 | 5' | -57.8 | NC_005259.1 | + | 22614 | 0.66 | 0.671244 |
Target: 5'- -cCGCCGACcGccgcccgaucaUCUUcGCCGCGUCGGu -3' miRNA: 3'- gaGCGGCUGcC-----------AGAAcCGGUGCAGCU- -5' |
|||||||
23514 | 5' | -57.8 | NC_005259.1 | + | 28963 | 0.66 | 0.671244 |
Target: 5'- aUCGCCGA-GGUCggugccgaGGCCGCGagCGc -3' miRNA: 3'- gAGCGGCUgCCAGaa------CCGGUGCa-GCu -5' |
|||||||
23514 | 5' | -57.8 | NC_005259.1 | + | 10952 | 0.66 | 0.681709 |
Target: 5'- cCUCGUCGGuguCGGUCUgaggggugUGGUCAUGUgaaCGAu -3' miRNA: 3'- -GAGCGGCU---GCCAGA--------ACCGGUGCA---GCU- -5' |
|||||||
23514 | 5' | -57.8 | NC_005259.1 | + | 38064 | 0.66 | 0.681709 |
Target: 5'- -cUGCCGACGaGccgccaUCgagcaUGGcCCACGUCGAg -3' miRNA: 3'- gaGCGGCUGC-C------AGa----ACC-GGUGCAGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home