miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23515 5' -54 NC_005259.1 + 18522 0.66 0.858787
Target:  5'- uGCC-CGCCGAUu---UCGgcaaGGCAGaGCCc -3'
miRNA:   3'- -CGGaGCGGCUAcuuuAGC----UCGUC-CGG- -5'
23515 5' -54 NC_005259.1 + 3046 0.66 0.850494
Target:  5'- gGCagaUCGCCGAcuacuaccGUCGA-CGGGCCg -3'
miRNA:   3'- -CGg--AGCGGCUacuu----UAGCUcGUCCGG- -5'
23515 5' -54 NC_005259.1 + 33349 0.66 0.850494
Target:  5'- ----gGUCGAUGcAAUCGGGCgAGGUCa -3'
miRNA:   3'- cggagCGGCUACuUUAGCUCG-UCCGG- -5'
23515 5' -54 NC_005259.1 + 2060 0.66 0.850494
Target:  5'- aCCgagacaCGgCGGUucAAUUGGGCGGGCCu -3'
miRNA:   3'- cGGa-----GCgGCUAcuUUAGCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 64761 0.66 0.850494
Target:  5'- cGCCUCGCgaCGGUGcgccUCG-GC-GGCCc -3'
miRNA:   3'- -CGGAGCG--GCUACuuu-AGCuCGuCCGG- -5'
23515 5' -54 NC_005259.1 + 14320 0.66 0.850494
Target:  5'- cGCCcucgaCGCCGccGcccgCGuGCGGGCCg -3'
miRNA:   3'- -CGGa----GCGGCuaCuuuaGCuCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 41850 0.66 0.847962
Target:  5'- aCCUCGaCGGUGucccacUCGAcgggcagcaccgugGCGGGCCg -3'
miRNA:   3'- cGGAGCgGCUACuuu---AGCU--------------CGUCCGG- -5'
23515 5' -54 NC_005259.1 + 31042 0.66 0.841978
Target:  5'- aCCUCGCCGAacgcgucGAccacauaguuGAUCGGGUcGGCg -3'
miRNA:   3'- cGGAGCGGCUa------CU----------UUAGCUCGuCCGg -5'
23515 5' -54 NC_005259.1 + 9169 0.66 0.841978
Target:  5'- uGCCgguggcaGCCGAUGcaauGGUCGAgGUcgucauacgGGGCCg -3'
miRNA:   3'- -CGGag-----CGGCUACu---UUAGCU-CG---------UCCGG- -5'
23515 5' -54 NC_005259.1 + 45117 0.66 0.841114
Target:  5'- gGCCgagaguggUGCCGAcGAGGUCGGcaaucugcugaucGCucAGGCCg -3'
miRNA:   3'- -CGGa-------GCGGCUaCUUUAGCU-------------CG--UCCGG- -5'
23515 5' -54 NC_005259.1 + 42940 0.66 0.841114
Target:  5'- cCCUCGCCG-------UGGGCgAGGCCg -3'
miRNA:   3'- cGGAGCGGCuacuuuaGCUCG-UCCGG- -5'
23515 5' -54 NC_005259.1 + 2633 0.66 0.833245
Target:  5'- aCCUCGCCGAacAAGggCGGugucGCGGGCa -3'
miRNA:   3'- cGGAGCGGCUacUUUa-GCU----CGUCCGg -5'
23515 5' -54 NC_005259.1 + 57123 0.66 0.833245
Target:  5'- uCCUCGCCcaucGgcGGGAcCGAGCAguaguGGCCc -3'
miRNA:   3'- cGGAGCGG----CuaCUUUaGCUCGU-----CCGG- -5'
23515 5' -54 NC_005259.1 + 43256 0.66 0.833245
Target:  5'- cGCCcgCGCCGGgugccUGAGAgUUGAccGCAGcGCCc -3'
miRNA:   3'- -CGGa-GCGGCU-----ACUUU-AGCU--CGUC-CGG- -5'
23515 5' -54 NC_005259.1 + 1850 0.66 0.827906
Target:  5'- cGCCgagGCCGA-GAAAgcCGccgccgcguuccguaAGCAGGCCg -3'
miRNA:   3'- -CGGag-CGGCUaCUUUa-GC---------------UCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 7327 0.66 0.824306
Target:  5'- cGCCgUCGCCGAguacGUCGA---GGCCg -3'
miRNA:   3'- -CGG-AGCGGCUacuuUAGCUcguCCGG- -5'
23515 5' -54 NC_005259.1 + 14536 0.66 0.824306
Target:  5'- cGUUUCgguGCCGAguucGUCcGGCAGGCCg -3'
miRNA:   3'- -CGGAG---CGGCUacuuUAGcUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 8058 0.66 0.824306
Target:  5'- cGCCggUCGCCGccGAcAUCGAGaucGuGCCg -3'
miRNA:   3'- -CGG--AGCGGCuaCUuUAGCUCgu-C-CGG- -5'
23515 5' -54 NC_005259.1 + 14727 0.66 0.824306
Target:  5'- cGCgCUCGUCGccGAGAUguaCGcGCuGGCCg -3'
miRNA:   3'- -CG-GAGCGGCuaCUUUA---GCuCGuCCGG- -5'
23515 5' -54 NC_005259.1 + 10744 0.67 0.81517
Target:  5'- aCCgcgCGCUGccGGGcgaucaucauGUCGGGCGGGUCa -3'
miRNA:   3'- cGGa--GCGGCuaCUU----------UAGCUCGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.