miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23515 5' -54 NC_005259.1 + 56789 0.79 0.213032
Target:  5'- cGCCgUUGCCGAUGAacaGAUCGGggucGguGGCCa -3'
miRNA:   3'- -CGG-AGCGGCUACU---UUAGCU----CguCCGG- -5'
23515 5' -54 NC_005259.1 + 39142 0.79 0.218673
Target:  5'- uGCCcgaugugaUCGCCGAcguUGAAaccgccgaacacGUCGAGCAGGUCg -3'
miRNA:   3'- -CGG--------AGCGGCU---ACUU------------UAGCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 51395 0.77 0.254592
Target:  5'- cGCCccacguguucacaUCGCCGAggggccgguUGAGGUCuuGGGCGGGCCa -3'
miRNA:   3'- -CGG-------------AGCGGCU---------ACUUUAG--CUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 25959 0.77 0.25524
Target:  5'- gGCC-CGCCGAcgccugcgaUGAGAcCGGGCAGcGCCg -3'
miRNA:   3'- -CGGaGCGGCU---------ACUUUaGCUCGUC-CGG- -5'
23515 5' -54 NC_005259.1 + 68765 0.76 0.304069
Target:  5'- aCCUCGCCaucGGUGuacUUGAGCAGGUCg -3'
miRNA:   3'- cGGAGCGG---CUACuuuAGCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 4204 0.76 0.304069
Target:  5'- aGCUcgacaCGCUcAUcGAGAUCGAGCAGGCCa -3'
miRNA:   3'- -CGGa----GCGGcUA-CUUUAGCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 30910 0.76 0.319278
Target:  5'- ---gUGCCGGuUGAGcgUGAGCAGGCCa -3'
miRNA:   3'- cggaGCGGCU-ACUUuaGCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 42359 0.75 0.335051
Target:  5'- gGCCgguagacaugaUCGuuGAgGAAggCGGGCAGGCCg -3'
miRNA:   3'- -CGG-----------AGCggCUaCUUuaGCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 55703 0.74 0.394644
Target:  5'- aGCCUCGuuGAUGGccgCGAGCAccucGCCc -3'
miRNA:   3'- -CGGAGCggCUACUuuaGCUCGUc---CGG- -5'
23515 5' -54 NC_005259.1 + 21265 0.74 0.394644
Target:  5'- aGCCcauggUCGUCGGccUGA---CGAGCAGGCCg -3'
miRNA:   3'- -CGG-----AGCGGCU--ACUuuaGCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 27947 0.74 0.402788
Target:  5'- -gCUCGCCGGUGAAcggaucuGUC-AGCGuGGCCa -3'
miRNA:   3'- cgGAGCGGCUACUU-------UAGcUCGU-CCGG- -5'
23515 5' -54 NC_005259.1 + 35569 0.73 0.428793
Target:  5'- cGCCgacCGCCGAgaucccguuguagcUGAGGUCGGGUgcguccuGGCCa -3'
miRNA:   3'- -CGGa--GCGGCU--------------ACUUUAGCUCGu------CCGG- -5'
23515 5' -54 NC_005259.1 + 51616 0.73 0.449906
Target:  5'- cCCUCGCCGGUccacacGAGGUCGucggagcGGUAGGCg -3'
miRNA:   3'- cGGAGCGGCUA------CUUUAGC-------UCGUCCGg -5'
23515 5' -54 NC_005259.1 + 1324 0.73 0.464625
Target:  5'- cGCCaUgGUCGAUuucGAGAUCGAGCgcaacggugccuacuGGGCCg -3'
miRNA:   3'- -CGG-AgCGGCUA---CUUUAGCUCG---------------UCCGG- -5'
23515 5' -54 NC_005259.1 + 19659 0.73 0.464625
Target:  5'- cGCCUCgggcaGCCGcuacauccccggucaGgucGGGAUCGAGCAGGCUc -3'
miRNA:   3'- -CGGAG-----CGGC---------------Ua--CUUUAGCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 14171 0.73 0.471579
Target:  5'- aUCUCGCCGGgcgGguGgcaaccgcucaccccCGAGCAGGCCg -3'
miRNA:   3'- cGGAGCGGCUa--CuuUa--------------GCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 42996 0.72 0.484631
Target:  5'- cGCCcCGCCGAacaggGAcgagaacaaaccggcGAUgccgcCGAGCAGGCCg -3'
miRNA:   3'- -CGGaGCGGCUa----CU---------------UUA-----GCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 26435 0.72 0.52163
Target:  5'- cGCaC-CGCCGAg-----CGGGCGGGCCg -3'
miRNA:   3'- -CG-GaGCGGCUacuuuaGCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 36265 0.71 0.542656
Target:  5'- cGCCaCGCCGGacAGAUUGAGCAGcGCg -3'
miRNA:   3'- -CGGaGCGGCUacUUUAGCUCGUC-CGg -5'
23515 5' -54 NC_005259.1 + 56024 0.71 0.542656
Target:  5'- cCCUCGCCGGgcgGGAcuuccUCGGGC-GGCUg -3'
miRNA:   3'- cGGAGCGGCUa--CUUu----AGCUCGuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.