miRNA display CGI


Results 1 - 20 of 117 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23515 5' -54 NC_005259.1 + 827 0.67 0.81517
Target:  5'- aCCUCGCaccaCGAgaccaAGGUCGcugcGCAGGCCg -3'
miRNA:   3'- cGGAGCG----GCUac---UUUAGCu---CGUCCGG- -5'
23515 5' -54 NC_005259.1 + 1324 0.73 0.464625
Target:  5'- cGCCaUgGUCGAUuucGAGAUCGAGCgcaacggugccuacuGGGCCg -3'
miRNA:   3'- -CGG-AgCGGCUA---CUUUAGCUCG---------------UCCGG- -5'
23515 5' -54 NC_005259.1 + 1850 0.66 0.827906
Target:  5'- cGCCgagGCCGA-GAAAgcCGccgccgcguuccguaAGCAGGCCg -3'
miRNA:   3'- -CGGag-CGGCUaCUUUa-GC---------------UCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 2060 0.66 0.850494
Target:  5'- aCCgagacaCGgCGGUucAAUUGGGCGGGCCu -3'
miRNA:   3'- cGGa-----GCgGCUAcuUUAGCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 2633 0.66 0.833245
Target:  5'- aCCUCGCCGAacAAGggCGGugucGCGGGCa -3'
miRNA:   3'- cGGAGCGGCUacUUUa-GCU----CGUCCGg -5'
23515 5' -54 NC_005259.1 + 3046 0.66 0.850494
Target:  5'- gGCagaUCGCCGAcuacuaccGUCGA-CGGGCCg -3'
miRNA:   3'- -CGg--AGCGGCUacuu----UAGCUcGUCCGG- -5'
23515 5' -54 NC_005259.1 + 3092 0.69 0.6615
Target:  5'- aGCCgCGCagCGAUGAg--CGGGC-GGCCa -3'
miRNA:   3'- -CGGaGCG--GCUACUuuaGCUCGuCCGG- -5'
23515 5' -54 NC_005259.1 + 3292 0.7 0.625615
Target:  5'- cGCCUCGCCGGUcccucggCGAGCgcugcgucgacgugAGcGCCg -3'
miRNA:   3'- -CGGAGCGGCUAcuuua--GCUCG--------------UC-CGG- -5'
23515 5' -54 NC_005259.1 + 4204 0.76 0.304069
Target:  5'- aGCUcgacaCGCUcAUcGAGAUCGAGCAGGCCa -3'
miRNA:   3'- -CGGa----GCGGcUA-CUUUAGCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 5214 0.71 0.557539
Target:  5'- cGCgCUCGCCGAgcaauaccccgacgcUGAGAUCGAuGUGuGGCUc -3'
miRNA:   3'- -CG-GAGCGGCU---------------ACUUUAGCU-CGU-CCGG- -5'
23515 5' -54 NC_005259.1 + 6222 0.7 0.639764
Target:  5'- cGCCgCGCCGAcaccgUGAccgugggCGAGUGGGUCg -3'
miRNA:   3'- -CGGaGCGGCU-----ACUuua----GCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 6429 0.7 0.639764
Target:  5'- aCCUCGCCGAUGucggcaccGUCGcgcugaucGGCAGcGUCg -3'
miRNA:   3'- cGGAGCGGCUACuu------UAGC--------UCGUC-CGG- -5'
23515 5' -54 NC_005259.1 + 7244 0.71 0.563953
Target:  5'- aGCCgCGCCGGUG---UCGAGUGcGCCa -3'
miRNA:   3'- -CGGaGCGGCUACuuuAGCUCGUcCGG- -5'
23515 5' -54 NC_005259.1 + 7327 0.66 0.824306
Target:  5'- cGCCgUCGCCGAguacGUCGA---GGCCg -3'
miRNA:   3'- -CGG-AGCGGCUacuuUAGCUcguCCGG- -5'
23515 5' -54 NC_005259.1 + 8058 0.66 0.824306
Target:  5'- cGCCggUCGCCGccGAcAUCGAGaucGuGCCg -3'
miRNA:   3'- -CGG--AGCGGCuaCUuUAGCUCgu-C-CGG- -5'
23515 5' -54 NC_005259.1 + 8378 0.71 0.574687
Target:  5'- gGCCUCGgcaUCGgcGAGAgccucggCGAGCcGGGCCa -3'
miRNA:   3'- -CGGAGC---GGCuaCUUUa------GCUCG-UCCGG- -5'
23515 5' -54 NC_005259.1 + 9169 0.66 0.841978
Target:  5'- uGCCgguggcaGCCGAUGcaauGGUCGAgGUcgucauacgGGGCCg -3'
miRNA:   3'- -CGGag-----CGGCUACu---UUAGCU-CG---------UCCGG- -5'
23515 5' -54 NC_005259.1 + 9961 0.68 0.73618
Target:  5'- aGCCgacCGCCc--GAccaccgcaccGGUCGAGguGGCCa -3'
miRNA:   3'- -CGGa--GCGGcuaCU----------UUAGCUCguCCGG- -5'
23515 5' -54 NC_005259.1 + 10744 0.67 0.81517
Target:  5'- aCCgcgCGCUGccGGGcgaucaucauGUCGGGCGGGUCa -3'
miRNA:   3'- cGGa--GCGGCuaCUU----------UAGCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 11013 0.67 0.766871
Target:  5'- cGCCggacgCGCCGAggcagGAGuUCGccGGguGGUCa -3'
miRNA:   3'- -CGGa----GCGGCUa----CUUuAGC--UCguCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.