miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23515 5' -54 NC_005259.1 + 13227 0.68 0.756761
Target:  5'- gGCCUCGaCCGGccaccgUGAGGgcCGAGCAcccGGCg -3'
miRNA:   3'- -CGGAGC-GGCU------ACUUUa-GCUCGU---CCGg -5'
23515 5' -54 NC_005259.1 + 14171 0.73 0.471579
Target:  5'- aUCUCGCCGGgcgGguGgcaaccgcucaccccCGAGCAGGCCg -3'
miRNA:   3'- cGGAGCGGCUa--CuuUa--------------GCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 14320 0.66 0.850494
Target:  5'- cGCCcucgaCGCCGccGcccgCGuGCGGGCCg -3'
miRNA:   3'- -CGGa----GCGGCuaCuuuaGCuCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 14536 0.66 0.824306
Target:  5'- cGUUUCgguGCCGAguucGUCcGGCAGGCCg -3'
miRNA:   3'- -CGGAG---CGGCUacuuUAGcUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 14727 0.66 0.824306
Target:  5'- cGCgCUCGUCGccGAGAUguaCGcGCuGGCCg -3'
miRNA:   3'- -CG-GAGCGGCuaCUUUA---GCuCGuCCGG- -5'
23515 5' -54 NC_005259.1 + 15364 0.69 0.702435
Target:  5'- aUCUCGCCGAUcugggCGAGCugccgcaaccguGGCCg -3'
miRNA:   3'- cGGAGCGGCUAcuuuaGCUCGu-----------CCGG- -5'
23515 5' -54 NC_005259.1 + 16577 0.69 0.672333
Target:  5'- gGCagaUCGCCGAgGAcAUCGcccGCgAGGCCa -3'
miRNA:   3'- -CGg--AGCGGCUaCUuUAGCu--CG-UCCGG- -5'
23515 5' -54 NC_005259.1 + 17509 0.68 0.740332
Target:  5'- aCCUUGCCGAUccGAGcUCGugggcacacagcgacGGCGGGCa -3'
miRNA:   3'- cGGAGCGGCUA--CUUuAGC---------------UCGUCCGg -5'
23515 5' -54 NC_005259.1 + 18522 0.66 0.858787
Target:  5'- uGCC-CGCCGAUu---UCGgcaaGGCAGaGCCc -3'
miRNA:   3'- -CGGaGCGGCUAcuuuAGC----UCGUC-CGG- -5'
23515 5' -54 NC_005259.1 + 18848 0.67 0.78374
Target:  5'- gGUCUCGCCGGUGccGUgcaacgguugcgcgCGuGGgAGGCCa -3'
miRNA:   3'- -CGGAGCGGCUACuuUA--------------GC-UCgUCCGG- -5'
23515 5' -54 NC_005259.1 + 19512 0.7 0.618
Target:  5'- uGCCaCGCgCGcgGAAAUccucaccgcCGuGCAGGCCg -3'
miRNA:   3'- -CGGaGCG-GCuaCUUUA---------GCuCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 19659 0.73 0.464625
Target:  5'- cGCCUCgggcaGCCGcuacauccccggucaGgucGGGAUCGAGCAGGCUc -3'
miRNA:   3'- -CGGAG-----CGGC---------------Ua--CUUUAGCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 21265 0.74 0.394644
Target:  5'- aGCCcauggUCGUCGGccUGA---CGAGCAGGCCg -3'
miRNA:   3'- -CGG-----AGCGGCU--ACUuuaGCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 22526 0.71 0.574687
Target:  5'- aCCgUCGCCGGUGAuuUCcAGCAGuCCg -3'
miRNA:   3'- cGG-AGCGGCUACUuuAGcUCGUCcGG- -5'
23515 5' -54 NC_005259.1 + 22554 0.67 0.786672
Target:  5'- aCCUCGCCGAggucaUGGAAgccgccacCGAGUAcguGGUCg -3'
miRNA:   3'- cGGAGCGGCU-----ACUUUa-------GCUCGU---CCGG- -5'
23515 5' -54 NC_005259.1 + 23323 0.71 0.589789
Target:  5'- gGUgUCGCCGAgccgGAuuacAUCGGGCucgaggcugccugcgAGGCCg -3'
miRNA:   3'- -CGgAGCGGCUa---CUu---UAGCUCG---------------UCCGG- -5'
23515 5' -54 NC_005259.1 + 23650 0.68 0.715189
Target:  5'- gGCC-CGCCGAcggcgacggcUGGAccgccgacccCGAGCAGGCg -3'
miRNA:   3'- -CGGaGCGGCU----------ACUUua--------GCUCGUCCGg -5'
23515 5' -54 NC_005259.1 + 24420 0.67 0.796342
Target:  5'- aCCUCGgCGAgGAAG-CGAcaGCGGGCa -3'
miRNA:   3'- cGGAGCgGCUaCUUUaGCU--CGUCCGg -5'
23515 5' -54 NC_005259.1 + 24872 0.68 0.756761
Target:  5'- cGCCUCGCucugaccgcuauCGAgucagccGAGGacggCGAGCGGGUCu -3'
miRNA:   3'- -CGGAGCG------------GCUa------CUUUa---GCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 25846 0.7 0.65064
Target:  5'- aCCUCGCgGAUGugguacUCGAuguGCGGGCg -3'
miRNA:   3'- cGGAGCGgCUACuuu---AGCU---CGUCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.