miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23515 5' -54 NC_005259.1 + 60495 0.71 0.553274
Target:  5'- cGCCcagcacgCGCCGGUGuuGUCGuAGUgcgccauggccGGGCCg -3'
miRNA:   3'- -CGGa------GCGGCUACuuUAGC-UCG-----------UCCGG- -5'
23515 5' -54 NC_005259.1 + 48631 0.71 0.553274
Target:  5'- uGCCUCGCCGA-GA---CGGGCu-GCCa -3'
miRNA:   3'- -CGGAGCGGCUaCUuuaGCUCGucCGG- -5'
23515 5' -54 NC_005259.1 + 5214 0.71 0.557539
Target:  5'- cGCgCUCGCCGAgcaauaccccgacgcUGAGAUCGAuGUGuGGCUc -3'
miRNA:   3'- -CG-GAGCGGCU---------------ACUUUAGCU-CGU-CCGG- -5'
23515 5' -54 NC_005259.1 + 38062 0.71 0.563953
Target:  5'- uCCU-GCCGAcGAGccgccAUCGAGCAuGGCCc -3'
miRNA:   3'- cGGAgCGGCUaCUU-----UAGCUCGU-CCGG- -5'
23515 5' -54 NC_005259.1 + 7244 0.71 0.563953
Target:  5'- aGCCgCGCCGGUG---UCGAGUGcGCCa -3'
miRNA:   3'- -CGGaGCGGCUACuuuAGCUCGUcCGG- -5'
23515 5' -54 NC_005259.1 + 49692 0.71 0.574687
Target:  5'- gGCCUCGCgcucgcuguCGGUGAGAUCcGgcagauauucGGCGGGCg -3'
miRNA:   3'- -CGGAGCG---------GCUACUUUAG-C----------UCGUCCGg -5'
23515 5' -54 NC_005259.1 + 22526 0.71 0.574687
Target:  5'- aCCgUCGCCGGUGAuuUCcAGCAGuCCg -3'
miRNA:   3'- cGG-AGCGGCUACUuuAGcUCGUCcGG- -5'
23515 5' -54 NC_005259.1 + 8378 0.71 0.574687
Target:  5'- gGCCUCGgcaUCGgcGAGAgccucggCGAGCcGGGCCa -3'
miRNA:   3'- -CGGAGC---GGCuaCUUUa------GCUCG-UCCGG- -5'
23515 5' -54 NC_005259.1 + 40037 0.71 0.585466
Target:  5'- uGCUuugaggUCGCCGGUGA--UCGGGUcGGUCg -3'
miRNA:   3'- -CGG------AGCGGCUACUuuAGCUCGuCCGG- -5'
23515 5' -54 NC_005259.1 + 23323 0.71 0.589789
Target:  5'- gGUgUCGCCGAgccgGAuuacAUCGGGCucgaggcugccugcgAGGCCg -3'
miRNA:   3'- -CGgAGCGGCUa---CUu---UAGCUCG---------------UCCGG- -5'
23515 5' -54 NC_005259.1 + 68686 0.7 0.596284
Target:  5'- gGCCUUcUCGAUGA--UCGAGgCGGGCa -3'
miRNA:   3'- -CGGAGcGGCUACUuuAGCUC-GUCCGg -5'
23515 5' -54 NC_005259.1 + 61280 0.7 0.596284
Target:  5'- gGUCUCgauGCCGAcGAAcgCGAGC-GGCUg -3'
miRNA:   3'- -CGGAG---CGGCUaCUUuaGCUCGuCCGG- -5'
23515 5' -54 NC_005259.1 + 46973 0.7 0.596284
Target:  5'- gGCCacgcCGCCGAUGA--UCGGGCcgaGGGUg -3'
miRNA:   3'- -CGGa---GCGGCUACUuuAGCUCG---UCCGg -5'
23515 5' -54 NC_005259.1 + 45850 0.7 0.596284
Target:  5'- aCCgggGCCGGUGGGAcCGGGCAuGCCg -3'
miRNA:   3'- cGGag-CGGCUACUUUaGCUCGUcCGG- -5'
23515 5' -54 NC_005259.1 + 19512 0.7 0.618
Target:  5'- uGCCaCGCgCGcgGAAAUccucaccgcCGuGCAGGCCg -3'
miRNA:   3'- -CGGaGCG-GCuaCUUUA---------GCuCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 45514 0.7 0.624527
Target:  5'- gGCCaccgCGCCGGUGuuGgccgccguggcugCGAGCGGGUUg -3'
miRNA:   3'- -CGGa---GCGGCUACuuUa------------GCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 3292 0.7 0.625615
Target:  5'- cGCCUCGCCGGUcccucggCGAGCgcugcgucgacgugAGcGCCg -3'
miRNA:   3'- -CGGAGCGGCUAcuuua--GCUCG--------------UC-CGG- -5'
23515 5' -54 NC_005259.1 + 55880 0.7 0.62888
Target:  5'- cGCCUCGCCccGAccucgGggGUCGcGCcgGGGUCg -3'
miRNA:   3'- -CGGAGCGG--CUa----CuuUAGCuCG--UCCGG- -5'
23515 5' -54 NC_005259.1 + 6222 0.7 0.639764
Target:  5'- cGCCgCGCCGAcaccgUGAccgugggCGAGUGGGUCg -3'
miRNA:   3'- -CGGaGCGGCU-----ACUuua----GCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 6429 0.7 0.639764
Target:  5'- aCCUCGCCGAUGucggcaccGUCGcgcugaucGGCAGcGUCg -3'
miRNA:   3'- cGGAGCGGCUACuu------UAGC--------UCGUC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.