miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23515 5' -54 NC_005259.1 + 10744 0.67 0.81517
Target:  5'- aCCgcgCGCUGccGGGcgaucaucauGUCGGGCGGGUCa -3'
miRNA:   3'- cGGa--GCGGCuaCUU----------UAGCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 22554 0.67 0.786672
Target:  5'- aCCUCGCCGAggucaUGGAAgccgccacCGAGUAcguGGUCg -3'
miRNA:   3'- cGGAGCGGCU-----ACUUUa-------GCUCGU---CCGG- -5'
23515 5' -54 NC_005259.1 + 61587 0.67 0.776845
Target:  5'- aUCUCaugcgguggGCCGGUGggGUCG-GCGGGg- -3'
miRNA:   3'- cGGAG---------CGGCUACuuUAGCuCGUCCgg -5'
23515 5' -54 NC_005259.1 + 47923 0.67 0.786672
Target:  5'- gGCgUCGCCGAggcccugGAAGcCGAugacgGCGGuGCCg -3'
miRNA:   3'- -CGgAGCGGCUa------CUUUaGCU-----CGUC-CGG- -5'
23515 5' -54 NC_005259.1 + 55433 0.67 0.776845
Target:  5'- aGCCgacgaCGCCGAcGAAcgCGuacaGGGCCa -3'
miRNA:   3'- -CGGa----GCGGCUaCUUuaGCucg-UCCGG- -5'
23515 5' -54 NC_005259.1 + 57024 0.67 0.776845
Target:  5'- cGgCUCgGCgCGGUGggGUCGcacucgucGUAGGCCc -3'
miRNA:   3'- -CgGAG-CG-GCUACuuUAGCu-------CGUCCGG- -5'
23515 5' -54 NC_005259.1 + 11013 0.67 0.766871
Target:  5'- cGCCggacgCGCCGAggcagGAGuUCGccGGguGGUCa -3'
miRNA:   3'- -CGGa----GCGGCUa----CUUuAGC--UCguCCGG- -5'
23515 5' -54 NC_005259.1 + 34726 0.67 0.776845
Target:  5'- cGCCUCGUCGggGAaaccguugguGAUCGuGC--GCCa -3'
miRNA:   3'- -CGGAGCGGCuaCU----------UUAGCuCGucCGG- -5'
23515 5' -54 NC_005259.1 + 58979 0.67 0.766871
Target:  5'- -gCUCGUCGgcGAcggCGAGCuuGGCCu -3'
miRNA:   3'- cgGAGCGGCuaCUuuaGCUCGu-CCGG- -5'
23515 5' -54 NC_005259.1 + 32084 0.67 0.81517
Target:  5'- uCCUCGuCCGA-GAAAcCGGGCGguGGCg -3'
miRNA:   3'- cGGAGC-GGCUaCUUUaGCUCGU--CCGg -5'
23515 5' -54 NC_005259.1 + 18848 0.67 0.78374
Target:  5'- gGUCUCGCCGGUGccGUgcaacgguugcgcgCGuGGgAGGCCa -3'
miRNA:   3'- -CGGAGCGGCUACuuUA--------------GC-UCgUCCGG- -5'
23515 5' -54 NC_005259.1 + 24420 0.67 0.796342
Target:  5'- aCCUCGgCGAgGAAG-CGAcaGCGGGCa -3'
miRNA:   3'- cGGAGCgGCUaCUUUaGCU--CGUCCGg -5'
23515 5' -54 NC_005259.1 + 42870 0.67 0.803013
Target:  5'- aCCUCGUgaacaggucggucuCGGUGggGUUGAGCAcGaGCUc -3'
miRNA:   3'- cGGAGCG--------------GCUACuuUAGCUCGU-C-CGG- -5'
23515 5' -54 NC_005259.1 + 827 0.67 0.81517
Target:  5'- aCCUCGCaccaCGAgaccaAGGUCGcugcGCAGGCCg -3'
miRNA:   3'- cGGAGCG----GCUac---UUUAGCu---CGUCCGG- -5'
23515 5' -54 NC_005259.1 + 56235 0.67 0.81517
Target:  5'- cGUCgcCGCCGAccacguUGGGAUCG-GC-GGCCu -3'
miRNA:   3'- -CGGa-GCGGCU------ACUUUAGCuCGuCCGG- -5'
23515 5' -54 NC_005259.1 + 44248 0.68 0.735139
Target:  5'- cGCCcgCGCgCGA-GAAGUCG-GCgacaucgAGGCCg -3'
miRNA:   3'- -CGGa-GCG-GCUaCUUUAGCuCG-------UCCGG- -5'
23515 5' -54 NC_005259.1 + 62653 0.68 0.715189
Target:  5'- uUCUCGuuGucGAGAcCGAGCgAGGCCa -3'
miRNA:   3'- cGGAGCggCuaCUUUaGCUCG-UCCGG- -5'
23515 5' -54 NC_005259.1 + 51045 0.68 0.72573
Target:  5'- gGCacgCGCCauccuUGAaccAAUCGAGCAGcGCCu -3'
miRNA:   3'- -CGga-GCGGcu---ACU---UUAGCUCGUC-CGG- -5'
23515 5' -54 NC_005259.1 + 52147 0.68 0.72573
Target:  5'- aCCUCGCCGAgg----CaGGCAGcGCCg -3'
miRNA:   3'- cGGAGCGGCUacuuuaGcUCGUC-CGG- -5'
23515 5' -54 NC_005259.1 + 62536 0.68 0.72573
Target:  5'- gGCCUCGacgguCCGA-GAGAUagccucacCGGGCAgcGGCCa -3'
miRNA:   3'- -CGGAGC-----GGCUaCUUUA--------GCUCGU--CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.