miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23515 5' -54 NC_005259.1 + 52147 0.68 0.72573
Target:  5'- aCCUCGCCGAgg----CaGGCAGcGCCg -3'
miRNA:   3'- cGGAGCGGCUacuuuaGcUCGUC-CGG- -5'
23515 5' -54 NC_005259.1 + 62536 0.68 0.72573
Target:  5'- gGCCUCGacgguCCGA-GAGAUagccucacCGGGCAgcGGCCa -3'
miRNA:   3'- -CGGAGC-----GGCUaCUUUA--------GCUCGU--CCGG- -5'
23515 5' -54 NC_005259.1 + 37170 0.68 0.72573
Target:  5'- cGCC-CGCCGAcgccgcgcGAGGaCGAGCugcGGCCc -3'
miRNA:   3'- -CGGaGCGGCUa-------CUUUaGCUCGu--CCGG- -5'
23515 5' -54 NC_005259.1 + 44248 0.68 0.735139
Target:  5'- cGCCcgCGCgCGA-GAAGUCG-GCgacaucgAGGCCg -3'
miRNA:   3'- -CGGa-GCG-GCUaCUUUAGCuCG-------UCCGG- -5'
23515 5' -54 NC_005259.1 + 9961 0.68 0.73618
Target:  5'- aGCCgacCGCCc--GAccaccgcaccGGUCGAGguGGCCa -3'
miRNA:   3'- -CGGa--GCGGcuaCU----------UUAGCUCguCCGG- -5'
23515 5' -54 NC_005259.1 + 26089 0.68 0.73618
Target:  5'- gGCCgcCGCCGA-GAAGaccccCGAGCAGaccGCCg -3'
miRNA:   3'- -CGGa-GCGGCUaCUUUa----GCUCGUC---CGG- -5'
23515 5' -54 NC_005259.1 + 26210 0.68 0.73618
Target:  5'- gGCCgcCGCCGuguucagGAAGUCGuugaGGGCCa -3'
miRNA:   3'- -CGGa-GCGGCua-----CUUUAGCucg-UCCGG- -5'
23515 5' -54 NC_005259.1 + 34238 0.68 0.73618
Target:  5'- gGUCUUGCCGuUGAAcguguccgacacAUCGGGCucaGCCg -3'
miRNA:   3'- -CGGAGCGGCuACUU------------UAGCUCGuc-CGG- -5'
23515 5' -54 NC_005259.1 + 17509 0.68 0.740332
Target:  5'- aCCUUGCCGAUccGAGcUCGugggcacacagcgacGGCGGGCa -3'
miRNA:   3'- cGGAGCGGCUA--CUUuAGC---------------UCGUCCGg -5'
23515 5' -54 NC_005259.1 + 41496 0.68 0.746527
Target:  5'- aCCUCGgCGGUGg---CGGGCAGaCCg -3'
miRNA:   3'- cGGAGCgGCUACuuuaGCUCGUCcGG- -5'
23515 5' -54 NC_005259.1 + 54480 0.68 0.756761
Target:  5'- aGCCauccCGCCGAggGucAUCG-GCGGGCa -3'
miRNA:   3'- -CGGa---GCGGCUa-CuuUAGCuCGUCCGg -5'
23515 5' -54 NC_005259.1 + 67229 0.68 0.756761
Target:  5'- uGCCgaccaCGgCGGUguaGggGUUGAGCGgGGCCu -3'
miRNA:   3'- -CGGa----GCgGCUA---CuuUAGCUCGU-CCGG- -5'
23515 5' -54 NC_005259.1 + 13227 0.68 0.756761
Target:  5'- gGCCUCGaCCGGccaccgUGAGGgcCGAGCAcccGGCg -3'
miRNA:   3'- -CGGAGC-GGCU------ACUUUa-GCUCGU---CCGg -5'
23515 5' -54 NC_005259.1 + 24872 0.68 0.756761
Target:  5'- cGCCUCGCucugaccgcuauCGAgucagccGAGGacggCGAGCGGGUCu -3'
miRNA:   3'- -CGGAGCG------------GCUa------CUUUa---GCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 50218 0.68 0.756761
Target:  5'- cGCCUCGUcaaucuCGAUccGAGcgCGGGCGcggaucguGGCCa -3'
miRNA:   3'- -CGGAGCG------GCUA--CUUuaGCUCGU--------CCGG- -5'
23515 5' -54 NC_005259.1 + 55124 0.68 0.756761
Target:  5'- aCCggcUGCCG-UGc---CGAGCAGGCCg -3'
miRNA:   3'- cGGa--GCGGCuACuuuaGCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 3092 0.69 0.6615
Target:  5'- aGCCgCGCagCGAUGAg--CGGGC-GGCCa -3'
miRNA:   3'- -CGGaGCG--GCUACUuuaGCUCGuCCGG- -5'
23515 5' -54 NC_005259.1 + 62587 0.69 0.665837
Target:  5'- aCCUCGCCcucGAUGAGAggcugugUGAGCugacgccgcaccguGGCCa -3'
miRNA:   3'- cGGAGCGG---CUACUUUa------GCUCGu-------------CCGG- -5'
23515 5' -54 NC_005259.1 + 40451 0.69 0.672333
Target:  5'- gGCCU-GCCGGUGugGUUGAcguacuGCcGGGCCg -3'
miRNA:   3'- -CGGAgCGGCUACuuUAGCU------CG-UCCGG- -5'
23515 5' -54 NC_005259.1 + 40641 0.69 0.672333
Target:  5'- uGCCgUCGCCGA-GAAAgucaugcucgcCGAGCAGcGCg -3'
miRNA:   3'- -CGG-AGCGGCUaCUUUa----------GCUCGUC-CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.