miRNA display CGI


Results 41 - 60 of 117 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23515 5' -54 NC_005259.1 + 68765 0.76 0.304069
Target:  5'- aCCUCGCCaucGGUGuacUUGAGCAGGUCg -3'
miRNA:   3'- cGGAGCGG---CUACuuuAGCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 4204 0.76 0.304069
Target:  5'- aGCUcgacaCGCUcAUcGAGAUCGAGCAGGCCa -3'
miRNA:   3'- -CGGa----GCGGcUA-CUUUAGCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 25959 0.77 0.25524
Target:  5'- gGCC-CGCCGAcgccugcgaUGAGAcCGGGCAGcGCCg -3'
miRNA:   3'- -CGGaGCGGCU---------ACUUUaGCUCGUC-CGG- -5'
23515 5' -54 NC_005259.1 + 51395 0.77 0.254592
Target:  5'- cGCCccacguguucacaUCGCCGAggggccgguUGAGGUCuuGGGCGGGCCa -3'
miRNA:   3'- -CGG-------------AGCGGCU---------ACUUUAG--CUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 39142 0.79 0.218673
Target:  5'- uGCCcgaugugaUCGCCGAcguUGAAaccgccgaacacGUCGAGCAGGUCg -3'
miRNA:   3'- -CGG--------AGCGGCU---ACUU------------UAGCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 19659 0.73 0.464625
Target:  5'- cGCCUCgggcaGCCGcuacauccccggucaGgucGGGAUCGAGCAGGCUc -3'
miRNA:   3'- -CGGAG-----CGGC---------------Ua--CUUUAGCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 14171 0.73 0.471579
Target:  5'- aUCUCGCCGGgcgGguGgcaaccgcucaccccCGAGCAGGCCg -3'
miRNA:   3'- cGGAGCGGCUa--CuuUa--------------GCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 40037 0.71 0.585466
Target:  5'- uGCUuugaggUCGCCGGUGA--UCGGGUcGGUCg -3'
miRNA:   3'- -CGG------AGCGGCUACUuuAGCUCGuCCGG- -5'
23515 5' -54 NC_005259.1 + 49692 0.71 0.574687
Target:  5'- gGCCUCGCgcucgcuguCGGUGAGAUCcGgcagauauucGGCGGGCg -3'
miRNA:   3'- -CGGAGCG---------GCUACUUUAG-C----------UCGUCCGg -5'
23515 5' -54 NC_005259.1 + 22526 0.71 0.574687
Target:  5'- aCCgUCGCCGGUGAuuUCcAGCAGuCCg -3'
miRNA:   3'- cGG-AGCGGCUACUuuAGcUCGUCcGG- -5'
23515 5' -54 NC_005259.1 + 8378 0.71 0.574687
Target:  5'- gGCCUCGgcaUCGgcGAGAgccucggCGAGCcGGGCCa -3'
miRNA:   3'- -CGGAGC---GGCuaCUUUa------GCUCG-UCCGG- -5'
23515 5' -54 NC_005259.1 + 7244 0.71 0.563953
Target:  5'- aGCCgCGCCGGUG---UCGAGUGcGCCa -3'
miRNA:   3'- -CGGaGCGGCUACuuuAGCUCGUcCGG- -5'
23515 5' -54 NC_005259.1 + 38062 0.71 0.563953
Target:  5'- uCCU-GCCGAcGAGccgccAUCGAGCAuGGCCc -3'
miRNA:   3'- cGGAgCGGCUaCUU-----UAGCUCGU-CCGG- -5'
23515 5' -54 NC_005259.1 + 5214 0.71 0.557539
Target:  5'- cGCgCUCGCCGAgcaauaccccgacgcUGAGAUCGAuGUGuGGCUc -3'
miRNA:   3'- -CG-GAGCGGCU---------------ACUUUAGCU-CGU-CCGG- -5'
23515 5' -54 NC_005259.1 + 60495 0.71 0.553274
Target:  5'- cGCCcagcacgCGCCGGUGuuGUCGuAGUgcgccauggccGGGCCg -3'
miRNA:   3'- -CGGa------GCGGCUACuuUAGC-UCG-----------UCCGG- -5'
23515 5' -54 NC_005259.1 + 48631 0.71 0.553274
Target:  5'- uGCCUCGCCGA-GA---CGGGCu-GCCa -3'
miRNA:   3'- -CGGAGCGGCUaCUuuaGCUCGucCGG- -5'
23515 5' -54 NC_005259.1 + 56024 0.71 0.542656
Target:  5'- cCCUCGCCGGgcgGGAcuuccUCGGGC-GGCUg -3'
miRNA:   3'- cGGAGCGGCUa--CUUu----AGCUCGuCCGG- -5'
23515 5' -54 NC_005259.1 + 36265 0.71 0.542656
Target:  5'- cGCCaCGCCGGacAGAUUGAGCAGcGCg -3'
miRNA:   3'- -CGGaGCGGCUacUUUAGCUCGUC-CGg -5'
23515 5' -54 NC_005259.1 + 26435 0.72 0.52163
Target:  5'- cGCaC-CGCCGAg-----CGGGCGGGCCg -3'
miRNA:   3'- -CG-GaGCGGCUacuuuaGCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 42996 0.72 0.484631
Target:  5'- cGCCcCGCCGAacaggGAcgagaacaaaccggcGAUgccgcCGAGCAGGCCg -3'
miRNA:   3'- -CGGaGCGGCUa----CU---------------UUA-----GCUCGUCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.