miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23515 5' -54 NC_005259.1 + 25959 0.77 0.25524
Target:  5'- gGCC-CGCCGAcgccugcgaUGAGAcCGGGCAGcGCCg -3'
miRNA:   3'- -CGGaGCGGCU---------ACUUUaGCUCGUC-CGG- -5'
23515 5' -54 NC_005259.1 + 26089 0.68 0.73618
Target:  5'- gGCCgcCGCCGA-GAAGaccccCGAGCAGaccGCCg -3'
miRNA:   3'- -CGGa-GCGGCUaCUUUa----GCUCGUC---CGG- -5'
23515 5' -54 NC_005259.1 + 26125 0.69 0.693878
Target:  5'- cGCCggUCGCCGGUccgacgccgccGAGGcCGAGCAGcCCg -3'
miRNA:   3'- -CGG--AGCGGCUA-----------CUUUaGCUCGUCcGG- -5'
23515 5' -54 NC_005259.1 + 26210 0.68 0.73618
Target:  5'- gGCCgcCGCCGuguucagGAAGUCGuugaGGGCCa -3'
miRNA:   3'- -CGGa-GCGGCua-----CUUUAGCucg-UCCGG- -5'
23515 5' -54 NC_005259.1 + 26435 0.72 0.52163
Target:  5'- cGCaC-CGCCGAg-----CGGGCGGGCCg -3'
miRNA:   3'- -CG-GaGCGGCUacuuuaGCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 27019 0.69 0.704568
Target:  5'- cGCCgCGCCGuagcUGAAcaccUUGAGCuuGGCCu -3'
miRNA:   3'- -CGGaGCGGCu---ACUUu---AGCUCGu-CCGG- -5'
23515 5' -54 NC_005259.1 + 27947 0.74 0.402788
Target:  5'- -gCUCGCCGGUGAAcggaucuGUC-AGCGuGGCCa -3'
miRNA:   3'- cgGAGCGGCUACUU-------UAGcUCGU-CCGG- -5'
23515 5' -54 NC_005259.1 + 28957 0.7 0.65064
Target:  5'- cGCCgcaUCGCCGA---GGUCGGuGCcgAGGCCg -3'
miRNA:   3'- -CGG---AGCGGCUacuUUAGCU-CG--UCCGG- -5'
23515 5' -54 NC_005259.1 + 30910 0.76 0.319278
Target:  5'- ---gUGCCGGuUGAGcgUGAGCAGGCCa -3'
miRNA:   3'- cggaGCGGCU-ACUUuaGCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 31042 0.66 0.841978
Target:  5'- aCCUCGCCGAacgcgucGAccacauaguuGAUCGGGUcGGCg -3'
miRNA:   3'- cGGAGCGGCUa------CU----------UUAGCUCGuCCGg -5'
23515 5' -54 NC_005259.1 + 31120 0.68 0.72573
Target:  5'- cGCCcgaugUCGCCGAUGA--UCGGGaugcuGCCg -3'
miRNA:   3'- -CGG-----AGCGGCUACUuuAGCUCguc--CGG- -5'
23515 5' -54 NC_005259.1 + 32084 0.67 0.81517
Target:  5'- uCCUCGuCCGA-GAAAcCGGGCGguGGCg -3'
miRNA:   3'- cGGAGC-GGCUaCUUUaGCUCGU--CCGg -5'
23515 5' -54 NC_005259.1 + 33349 0.66 0.850494
Target:  5'- ----gGUCGAUGcAAUCGGGCgAGGUCa -3'
miRNA:   3'- cggagCGGCUACuUUAGCUCG-UCCGG- -5'
23515 5' -54 NC_005259.1 + 34238 0.68 0.73618
Target:  5'- gGUCUUGCCGuUGAAcguguccgacacAUCGGGCucaGCCg -3'
miRNA:   3'- -CGGAGCGGCuACUU------------UAGCUCGuc-CGG- -5'
23515 5' -54 NC_005259.1 + 34726 0.67 0.776845
Target:  5'- cGCCUCGUCGggGAaaccguugguGAUCGuGC--GCCa -3'
miRNA:   3'- -CGGAGCGGCuaCU----------UUAGCuCGucCGG- -5'
23515 5' -54 NC_005259.1 + 34868 0.7 0.65064
Target:  5'- uCCUCGUCGGUGccGGAccggggugccUCGGGCaggacGGGCCg -3'
miRNA:   3'- cGGAGCGGCUAC--UUU----------AGCUCG-----UCCGG- -5'
23515 5' -54 NC_005259.1 + 35569 0.73 0.428793
Target:  5'- cGCCgacCGCCGAgaucccguuguagcUGAGGUCGGGUgcguccuGGCCa -3'
miRNA:   3'- -CGGa--GCGGCU--------------ACUUUAGCUCGu------CCGG- -5'
23515 5' -54 NC_005259.1 + 36265 0.71 0.542656
Target:  5'- cGCCaCGCCGGacAGAUUGAGCAGcGCg -3'
miRNA:   3'- -CGGaGCGGCUacUUUAGCUCGUC-CGg -5'
23515 5' -54 NC_005259.1 + 36701 0.69 0.683129
Target:  5'- cGCC-CGCCGAUGAGcUCGuGCc-GCUc -3'
miRNA:   3'- -CGGaGCGGCUACUUuAGCuCGucCGG- -5'
23515 5' -54 NC_005259.1 + 37170 0.68 0.72573
Target:  5'- cGCC-CGCCGAcgccgcgcGAGGaCGAGCugcGGCCc -3'
miRNA:   3'- -CGGaGCGGCUa-------CUUUaGCUCGu--CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.