miRNA display CGI


Results 61 - 80 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23515 5' -54 NC_005259.1 + 38062 0.71 0.563953
Target:  5'- uCCU-GCCGAcGAGccgccAUCGAGCAuGGCCc -3'
miRNA:   3'- cGGAgCGGCUaCUU-----UAGCUCGU-CCGG- -5'
23515 5' -54 NC_005259.1 + 38672 0.69 0.672333
Target:  5'- aCCUCGCUGuUGGccgccgGGUCGAGguuGGCCa -3'
miRNA:   3'- cGGAGCGGCuACU------UUAGCUCgu-CCGG- -5'
23515 5' -54 NC_005259.1 + 39142 0.79 0.218673
Target:  5'- uGCCcgaugugaUCGCCGAcguUGAAaccgccgaacacGUCGAGCAGGUCg -3'
miRNA:   3'- -CGG--------AGCGGCU---ACUU------------UAGCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 39473 0.68 0.713071
Target:  5'- aGCCgUCGUCGcgGuagcacgagauAUCGAGCuugauGGCCg -3'
miRNA:   3'- -CGG-AGCGGCuaCuu---------UAGCUCGu----CCGG- -5'
23515 5' -54 NC_005259.1 + 40037 0.71 0.585466
Target:  5'- uGCUuugaggUCGCCGGUGA--UCGGGUcGGUCg -3'
miRNA:   3'- -CGG------AGCGGCUACUuuAGCUCGuCCGG- -5'
23515 5' -54 NC_005259.1 + 40451 0.69 0.672333
Target:  5'- gGCCU-GCCGGUGugGUUGAcguacuGCcGGGCCg -3'
miRNA:   3'- -CGGAgCGGCUACuuUAGCU------CG-UCCGG- -5'
23515 5' -54 NC_005259.1 + 40641 0.69 0.672333
Target:  5'- uGCCgUCGCCGA-GAAAgucaugcucgcCGAGCAGcGCg -3'
miRNA:   3'- -CGG-AGCGGCUaCUUUa----------GCUCGUC-CGg -5'
23515 5' -54 NC_005259.1 + 41496 0.68 0.746527
Target:  5'- aCCUCGgCGGUGg---CGGGCAGaCCg -3'
miRNA:   3'- cGGAGCgGCUACuuuaGCUCGUCcGG- -5'
23515 5' -54 NC_005259.1 + 41850 0.66 0.847962
Target:  5'- aCCUCGaCGGUGucccacUCGAcgggcagcaccgugGCGGGCCg -3'
miRNA:   3'- cGGAGCgGCUACuuu---AGCU--------------CGUCCGG- -5'
23515 5' -54 NC_005259.1 + 42359 0.75 0.335051
Target:  5'- gGCCgguagacaugaUCGuuGAgGAAggCGGGCAGGCCg -3'
miRNA:   3'- -CGG-----------AGCggCUaCUUuaGCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 42870 0.67 0.803013
Target:  5'- aCCUCGUgaacaggucggucuCGGUGggGUUGAGCAcGaGCUc -3'
miRNA:   3'- cGGAGCG--------------GCUACuuUAGCUCGU-C-CGG- -5'
23515 5' -54 NC_005259.1 + 42940 0.66 0.841114
Target:  5'- cCCUCGCCG-------UGGGCgAGGCCg -3'
miRNA:   3'- cGGAGCGGCuacuuuaGCUCG-UCCGG- -5'
23515 5' -54 NC_005259.1 + 42996 0.72 0.484631
Target:  5'- cGCCcCGCCGAacaggGAcgagaacaaaccggcGAUgccgcCGAGCAGGCCg -3'
miRNA:   3'- -CGGaGCGGCUa----CU---------------UUA-----GCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 43256 0.66 0.833245
Target:  5'- cGCCcgCGCCGGgugccUGAGAgUUGAccGCAGcGCCc -3'
miRNA:   3'- -CGGa-GCGGCU-----ACUUU-AGCU--CGUC-CGG- -5'
23515 5' -54 NC_005259.1 + 43442 0.69 0.704568
Target:  5'- gGCUgCGCuCGAUGAGacccgaggugucGUUGAGCAaccGGCCc -3'
miRNA:   3'- -CGGaGCG-GCUACUU------------UAGCUCGU---CCGG- -5'
23515 5' -54 NC_005259.1 + 44248 0.68 0.735139
Target:  5'- cGCCcgCGCgCGA-GAAGUCG-GCgacaucgAGGCCg -3'
miRNA:   3'- -CGGa-GCG-GCUaCUUUAGCuCG-------UCCGG- -5'
23515 5' -54 NC_005259.1 + 45117 0.66 0.841114
Target:  5'- gGCCgagaguggUGCCGAcGAGGUCGGcaaucugcugaucGCucAGGCCg -3'
miRNA:   3'- -CGGa-------GCGGCUaCUUUAGCU-------------CG--UCCGG- -5'
23515 5' -54 NC_005259.1 + 45514 0.7 0.624527
Target:  5'- gGCCaccgCGCCGGUGuuGgccgccguggcugCGAGCGGGUUg -3'
miRNA:   3'- -CGGa---GCGGCUACuuUa------------GCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 45850 0.7 0.596284
Target:  5'- aCCgggGCCGGUGGGAcCGGGCAuGCCg -3'
miRNA:   3'- cGGag-CGGCUACUUUaGCUCGUcCGG- -5'
23515 5' -54 NC_005259.1 + 46973 0.7 0.596284
Target:  5'- gGCCacgcCGCCGAUGA--UCGGGCcgaGGGUg -3'
miRNA:   3'- -CGGa---GCGGCUACUuuAGCUCG---UCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.