miRNA display CGI


Results 61 - 80 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23515 5' -54 NC_005259.1 + 53606 0.69 0.672333
Target:  5'- -gCUCGUCGGggucagcaGgcGUCGAGCGGuGCCg -3'
miRNA:   3'- cgGAGCGGCUa-------CuuUAGCUCGUC-CGG- -5'
23515 5' -54 NC_005259.1 + 16577 0.69 0.672333
Target:  5'- gGCagaUCGCCGAgGAcAUCGcccGCgAGGCCa -3'
miRNA:   3'- -CGg--AGCGGCUaCUuUAGCu--CG-UCCGG- -5'
23515 5' -54 NC_005259.1 + 38672 0.69 0.672333
Target:  5'- aCCUCGCUGuUGGccgccgGGUCGAGguuGGCCa -3'
miRNA:   3'- cGGAGCGGCuACU------UUAGCUCgu-CCGG- -5'
23515 5' -54 NC_005259.1 + 62985 0.69 0.672333
Target:  5'- uCCUCGCgcgucgacuCGAUGgcAUUG-GCAGGCUg -3'
miRNA:   3'- cGGAGCG---------GCUACuuUAGCuCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 36701 0.69 0.683129
Target:  5'- cGCC-CGCCGAUGAGcUCGuGCc-GCUc -3'
miRNA:   3'- -CGGaGCGGCUACUUuAGCuCGucCGG- -5'
23515 5' -54 NC_005259.1 + 66092 0.69 0.684207
Target:  5'- cGCCUgauggugcagcgcaCGCgCGAcuucuacgcgcGUCGAGCAGGCCa -3'
miRNA:   3'- -CGGA--------------GCG-GCUacuu-------UAGCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 26125 0.69 0.693878
Target:  5'- cGCCggUCGCCGGUccgacgccgccGAGGcCGAGCAGcCCg -3'
miRNA:   3'- -CGG--AGCGGCUA-----------CUUUaGCUCGUCcGG- -5'
23515 5' -54 NC_005259.1 + 15364 0.69 0.702435
Target:  5'- aUCUCGCCGAUcugggCGAGCugccgcaaccguGGCCg -3'
miRNA:   3'- cGGAGCGGCUAcuuuaGCUCGu-----------CCGG- -5'
23515 5' -54 NC_005259.1 + 43442 0.69 0.704568
Target:  5'- gGCUgCGCuCGAUGAGacccgaggugucGUUGAGCAaccGGCCc -3'
miRNA:   3'- -CGGaGCG-GCUACUU------------UAGCUCGU---CCGG- -5'
23515 5' -54 NC_005259.1 + 27019 0.69 0.704568
Target:  5'- cGCCgCGCCGuagcUGAAcaccUUGAGCuuGGCCu -3'
miRNA:   3'- -CGGaGCGGCu---ACUUu---AGCUCGu-CCGG- -5'
23515 5' -54 NC_005259.1 + 56834 0.69 0.704568
Target:  5'- cGCCUaUGUgGAUGAAAcCGAGCGuguuGGUCa -3'
miRNA:   3'- -CGGA-GCGgCUACUUUaGCUCGU----CCGG- -5'
23515 5' -54 NC_005259.1 + 45850 0.7 0.596284
Target:  5'- aCCgggGCCGGUGGGAcCGGGCAuGCCg -3'
miRNA:   3'- cGGag-CGGCUACUUUaGCUCGUcCGG- -5'
23515 5' -54 NC_005259.1 + 46973 0.7 0.596284
Target:  5'- gGCCacgcCGCCGAUGA--UCGGGCcgaGGGUg -3'
miRNA:   3'- -CGGa---GCGGCUACUuuAGCUCG---UCCGg -5'
23515 5' -54 NC_005259.1 + 61280 0.7 0.596284
Target:  5'- gGUCUCgauGCCGAcGAAcgCGAGC-GGCUg -3'
miRNA:   3'- -CGGAG---CGGCUaCUUuaGCUCGuCCGG- -5'
23515 5' -54 NC_005259.1 + 68686 0.7 0.596284
Target:  5'- gGCCUUcUCGAUGA--UCGAGgCGGGCa -3'
miRNA:   3'- -CGGAGcGGCUACUuuAGCUC-GUCCGg -5'
23515 5' -54 NC_005259.1 + 19512 0.7 0.618
Target:  5'- uGCCaCGCgCGcgGAAAUccucaccgcCGuGCAGGCCg -3'
miRNA:   3'- -CGGaGCG-GCuaCUUUA---------GCuCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 45514 0.7 0.624527
Target:  5'- gGCCaccgCGCCGGUGuuGgccgccguggcugCGAGCGGGUUg -3'
miRNA:   3'- -CGGa---GCGGCUACuuUa------------GCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 3292 0.7 0.625615
Target:  5'- cGCCUCGCCGGUcccucggCGAGCgcugcgucgacgugAGcGCCg -3'
miRNA:   3'- -CGGAGCGGCUAcuuua--GCUCG--------------UC-CGG- -5'
23515 5' -54 NC_005259.1 + 55880 0.7 0.62888
Target:  5'- cGCCUCGCCccGAccucgGggGUCGcGCcgGGGUCg -3'
miRNA:   3'- -CGGAGCGG--CUa----CuuUAGCuCG--UCCGG- -5'
23515 5' -54 NC_005259.1 + 6222 0.7 0.639764
Target:  5'- cGCCgCGCCGAcaccgUGAccgugggCGAGUGGGUCg -3'
miRNA:   3'- -CGGaGCGGCU-----ACUuua----GCUCGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.