miRNA display CGI


Results 1 - 20 of 117 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23515 5' -54 NC_005259.1 + 68876 0.7 0.65064
Target:  5'- cGCCgggcgCGCCGAUGAGGUaGAugAGGCg -3'
miRNA:   3'- -CGGa----GCGGCUACUUUAgCUcgUCCGg -5'
23515 5' -54 NC_005259.1 + 68765 0.76 0.304069
Target:  5'- aCCUCGCCaucGGUGuacUUGAGCAGGUCg -3'
miRNA:   3'- cGGAGCGG---CUACuuuAGCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 68686 0.7 0.596284
Target:  5'- gGCCUUcUCGAUGA--UCGAGgCGGGCa -3'
miRNA:   3'- -CGGAGcGGCUACUuuAGCUC-GUCCGg -5'
23515 5' -54 NC_005259.1 + 67229 0.68 0.756761
Target:  5'- uGCCgaccaCGgCGGUguaGggGUUGAGCGgGGCCu -3'
miRNA:   3'- -CGGa----GCgGCUA---CuuUAGCUCGU-CCGG- -5'
23515 5' -54 NC_005259.1 + 66092 0.69 0.684207
Target:  5'- cGCCUgauggugcagcgcaCGCgCGAcuucuacgcgcGUCGAGCAGGCCa -3'
miRNA:   3'- -CGGA--------------GCG-GCUacuu-------UAGCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 64761 0.66 0.850494
Target:  5'- cGCCUCGCgaCGGUGcgccUCG-GC-GGCCc -3'
miRNA:   3'- -CGGAGCG--GCUACuuu-AGCuCGuCCGG- -5'
23515 5' -54 NC_005259.1 + 62985 0.69 0.672333
Target:  5'- uCCUCGCgcgucgacuCGAUGgcAUUG-GCAGGCUg -3'
miRNA:   3'- cGGAGCG---------GCUACuuUAGCuCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 62653 0.68 0.715189
Target:  5'- uUCUCGuuGucGAGAcCGAGCgAGGCCa -3'
miRNA:   3'- cGGAGCggCuaCUUUaGCUCG-UCCGG- -5'
23515 5' -54 NC_005259.1 + 62587 0.69 0.665837
Target:  5'- aCCUCGCCcucGAUGAGAggcugugUGAGCugacgccgcaccguGGCCa -3'
miRNA:   3'- cGGAGCGG---CUACUUUa------GCUCGu-------------CCGG- -5'
23515 5' -54 NC_005259.1 + 62536 0.68 0.72573
Target:  5'- gGCCUCGacgguCCGA-GAGAUagccucacCGGGCAgcGGCCa -3'
miRNA:   3'- -CGGAGC-----GGCUaCUUUA--------GCUCGU--CCGG- -5'
23515 5' -54 NC_005259.1 + 61587 0.67 0.776845
Target:  5'- aUCUCaugcgguggGCCGGUGggGUCG-GCGGGg- -3'
miRNA:   3'- cGGAG---------CGGCUACuuUAGCuCGUCCgg -5'
23515 5' -54 NC_005259.1 + 61280 0.7 0.596284
Target:  5'- gGUCUCgauGCCGAcGAAcgCGAGC-GGCUg -3'
miRNA:   3'- -CGGAG---CGGCUaCUUuaGCUCGuCCGG- -5'
23515 5' -54 NC_005259.1 + 60495 0.71 0.553274
Target:  5'- cGCCcagcacgCGCCGGUGuuGUCGuAGUgcgccauggccGGGCCg -3'
miRNA:   3'- -CGGa------GCGGCUACuuUAGC-UCG-----------UCCGG- -5'
23515 5' -54 NC_005259.1 + 58979 0.67 0.766871
Target:  5'- -gCUCGUCGgcGAcggCGAGCuuGGCCu -3'
miRNA:   3'- cgGAGCGGCuaCUuuaGCUCGu-CCGG- -5'
23515 5' -54 NC_005259.1 + 58781 0.67 0.805845
Target:  5'- cGCUgugCGCCGGUcGAGGcggugauugccUCG-GCGGGCUc -3'
miRNA:   3'- -CGGa--GCGGCUA-CUUU-----------AGCuCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 57123 0.66 0.833245
Target:  5'- uCCUCGCCcaucGgcGGGAcCGAGCAguaguGGCCc -3'
miRNA:   3'- cGGAGCGG----CuaCUUUaGCUCGU-----CCGG- -5'
23515 5' -54 NC_005259.1 + 57024 0.67 0.776845
Target:  5'- cGgCUCgGCgCGGUGggGUCGcacucgucGUAGGCCc -3'
miRNA:   3'- -CgGAG-CG-GCUACuuUAGCu-------CGUCCGG- -5'
23515 5' -54 NC_005259.1 + 56834 0.69 0.704568
Target:  5'- cGCCUaUGUgGAUGAAAcCGAGCGuguuGGUCa -3'
miRNA:   3'- -CGGA-GCGgCUACUUUaGCUCGU----CCGG- -5'
23515 5' -54 NC_005259.1 + 56789 0.79 0.213032
Target:  5'- cGCCgUUGCCGAUGAacaGAUCGGggucGguGGCCa -3'
miRNA:   3'- -CGG-AGCGGCUACU---UUAGCU----CguCCGG- -5'
23515 5' -54 NC_005259.1 + 56417 0.7 0.65064
Target:  5'- gGCC-CGCCGAgcucaagcaGAGcagCGAGCgccGGGCCa -3'
miRNA:   3'- -CGGaGCGGCUa--------CUUua-GCUCG---UCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.