miRNA display CGI


Results 61 - 80 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23515 5' -54 NC_005259.1 + 26125 0.69 0.693878
Target:  5'- cGCCggUCGCCGGUccgacgccgccGAGGcCGAGCAGcCCg -3'
miRNA:   3'- -CGG--AGCGGCUA-----------CUUUaGCUCGUCcGG- -5'
23515 5' -54 NC_005259.1 + 66092 0.69 0.684207
Target:  5'- cGCCUgauggugcagcgcaCGCgCGAcuucuacgcgcGUCGAGCAGGCCa -3'
miRNA:   3'- -CGGA--------------GCG-GCUacuu-------UAGCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 36701 0.69 0.683129
Target:  5'- cGCC-CGCCGAUGAGcUCGuGCc-GCUc -3'
miRNA:   3'- -CGGaGCGGCUACUUuAGCuCGucCGG- -5'
23515 5' -54 NC_005259.1 + 53606 0.69 0.672333
Target:  5'- -gCUCGUCGGggucagcaGgcGUCGAGCGGuGCCg -3'
miRNA:   3'- cgGAGCGGCUa-------CuuUAGCUCGUC-CGG- -5'
23515 5' -54 NC_005259.1 + 40451 0.69 0.672333
Target:  5'- gGCCU-GCCGGUGugGUUGAcguacuGCcGGGCCg -3'
miRNA:   3'- -CGGAgCGGCUACuuUAGCU------CG-UCCGG- -5'
23515 5' -54 NC_005259.1 + 40641 0.69 0.672333
Target:  5'- uGCCgUCGCCGA-GAAAgucaugcucgcCGAGCAGcGCg -3'
miRNA:   3'- -CGG-AGCGGCUaCUUUa----------GCUCGUC-CGg -5'
23515 5' -54 NC_005259.1 + 16577 0.69 0.672333
Target:  5'- gGCagaUCGCCGAgGAcAUCGcccGCgAGGCCa -3'
miRNA:   3'- -CGg--AGCGGCUaCUuUAGCu--CG-UCCGG- -5'
23515 5' -54 NC_005259.1 + 38672 0.69 0.672333
Target:  5'- aCCUCGCUGuUGGccgccgGGUCGAGguuGGCCa -3'
miRNA:   3'- cGGAGCGGCuACU------UUAGCUCgu-CCGG- -5'
23515 5' -54 NC_005259.1 + 62985 0.69 0.672333
Target:  5'- uCCUCGCgcgucgacuCGAUGgcAUUG-GCAGGCUg -3'
miRNA:   3'- cGGAGCG---------GCUACuuUAGCuCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 62587 0.69 0.665837
Target:  5'- aCCUCGCCcucGAUGAGAggcugugUGAGCugacgccgcaccguGGCCa -3'
miRNA:   3'- cGGAGCGG---CUACUUUa------GCUCGu-------------CCGG- -5'
23515 5' -54 NC_005259.1 + 3092 0.69 0.6615
Target:  5'- aGCCgCGCagCGAUGAg--CGGGC-GGCCa -3'
miRNA:   3'- -CGGaGCG--GCUACUuuaGCUCGuCCGG- -5'
23515 5' -54 NC_005259.1 + 53938 0.7 0.654987
Target:  5'- gGCgUCGaccagcguuucccacCCGGUGAAcaugGUC-AGCAGGCCg -3'
miRNA:   3'- -CGgAGC---------------GGCUACUU----UAGcUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 25846 0.7 0.65064
Target:  5'- aCCUCGCgGAUGugguacUCGAuguGCGGGCg -3'
miRNA:   3'- cGGAGCGgCUACuuu---AGCU---CGUCCGg -5'
23515 5' -54 NC_005259.1 + 28957 0.7 0.65064
Target:  5'- cGCCgcaUCGCCGA---GGUCGGuGCcgAGGCCg -3'
miRNA:   3'- -CGG---AGCGGCUacuUUAGCU-CG--UCCGG- -5'
23515 5' -54 NC_005259.1 + 34868 0.7 0.65064
Target:  5'- uCCUCGUCGGUGccGGAccggggugccUCGGGCaggacGGGCCg -3'
miRNA:   3'- cGGAGCGGCUAC--UUU----------AGCUCG-----UCCGG- -5'
23515 5' -54 NC_005259.1 + 56417 0.7 0.65064
Target:  5'- gGCC-CGCCGAgcucaagcaGAGcagCGAGCgccGGGCCa -3'
miRNA:   3'- -CGGaGCGGCUa--------CUUua-GCUCG---UCCGG- -5'
23515 5' -54 NC_005259.1 + 68876 0.7 0.65064
Target:  5'- cGCCgggcgCGCCGAUGAGGUaGAugAGGCg -3'
miRNA:   3'- -CGGa----GCGGCUACUUUAgCUcgUCCGg -5'
23515 5' -54 NC_005259.1 + 6429 0.7 0.639764
Target:  5'- aCCUCGCCGAUGucggcaccGUCGcgcugaucGGCAGcGUCg -3'
miRNA:   3'- cGGAGCGGCUACuu------UAGC--------UCGUC-CGG- -5'
23515 5' -54 NC_005259.1 + 6222 0.7 0.639764
Target:  5'- cGCCgCGCCGAcaccgUGAccgugggCGAGUGGGUCg -3'
miRNA:   3'- -CGGaGCGGCU-----ACUuua----GCUCGUCCGG- -5'
23515 5' -54 NC_005259.1 + 55880 0.7 0.62888
Target:  5'- cGCCUCGCCccGAccucgGggGUCGcGCcgGGGUCg -3'
miRNA:   3'- -CGGAGCGG--CUa----CuuUAGCuCG--UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.