miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23516 5' -55.6 NC_005259.1 + 33384 0.67 0.690627
Target:  5'- cCGGUccGCcGAGCGCGaCGAGCcGUGUCc -3'
miRNA:   3'- cGUCA--CGcUUCGUGC-GCUCGuCACGG- -5'
23516 5' -55.6 NC_005259.1 + 41312 0.67 0.679894
Target:  5'- -gAGcGCGAGGUcgaccuCGaaaaGGGCGGUGCCg -3'
miRNA:   3'- cgUCaCGCUUCGu-----GCg---CUCGUCACGG- -5'
23516 5' -55.6 NC_005259.1 + 57886 0.67 0.673432
Target:  5'- gGCGGUGCGcgacagaccccgcuuGAGaCGgauguugguCGCGAcCAGUGCCa -3'
miRNA:   3'- -CGUCACGC---------------UUC-GU---------GCGCUcGUCACGG- -5'
23516 5' -55.6 NC_005259.1 + 32519 0.67 0.669116
Target:  5'- gGUAGU-CGAGGCGgGCG-GCAG-GCUu -3'
miRNA:   3'- -CGUCAcGCUUCGUgCGCuCGUCaCGG- -5'
23516 5' -55.6 NC_005259.1 + 47173 0.67 0.669116
Target:  5'- cGUAGcgGCGAAGguCG---GCGGUGCCg -3'
miRNA:   3'- -CGUCa-CGCUUCguGCgcuCGUCACGG- -5'
23516 5' -55.6 NC_005259.1 + 36044 0.67 0.658305
Target:  5'- ----aGCGAGGCcacccGCGCGAGCAccaccugcuguGUGCUc -3'
miRNA:   3'- cgucaCGCUUCG-----UGCGCUCGU-----------CACGG- -5'
23516 5' -55.6 NC_005259.1 + 57298 0.67 0.658305
Target:  5'- cGUAGUGCacgacaucGAGCAC-CG-GCGGUGUCg -3'
miRNA:   3'- -CGUCACGc-------UUCGUGcGCuCGUCACGG- -5'
23516 5' -55.6 NC_005259.1 + 26829 0.68 0.64747
Target:  5'- gGUGGUGcCGggGCggucuGCuCGGGCAGgaUGCCg -3'
miRNA:   3'- -CGUCAC-GCuuCG-----UGcGCUCGUC--ACGG- -5'
23516 5' -55.6 NC_005259.1 + 199 0.68 0.635537
Target:  5'- -uGGcGCGuGGCGCGacggcaagcaguuCGGGCAGUGCUa -3'
miRNA:   3'- cgUCaCGCuUCGUGC-------------GCUCGUCACGG- -5'
23516 5' -55.6 NC_005259.1 + 56180 0.68 0.614922
Target:  5'- aCGGUGcCGAcauacGCguuGCGCGAGCuGUGCUc -3'
miRNA:   3'- cGUCAC-GCUu----CG---UGCGCUCGuCACGG- -5'
23516 5' -55.6 NC_005259.1 + 26512 0.68 0.614922
Target:  5'- cGCccgGCGAgaagAGCGCgGUGAGCAGcuugGCCa -3'
miRNA:   3'- -CGucaCGCU----UCGUG-CGCUCGUCa---CGG- -5'
23516 5' -55.6 NC_005259.1 + 51667 0.68 0.614922
Target:  5'- cGCGG-GCGcgucgggcacGGGCGCGCGAugGUcucauaGGUGCCg -3'
miRNA:   3'- -CGUCaCGC----------UUCGUGCGCU--CG------UCACGG- -5'
23516 5' -55.6 NC_005259.1 + 57454 0.68 0.60409
Target:  5'- -uGGUGCGAcGC-UGCG-GCAG-GCCg -3'
miRNA:   3'- cgUCACGCUuCGuGCGCuCGUCaCGG- -5'
23516 5' -55.6 NC_005259.1 + 59385 0.69 0.571767
Target:  5'- cGCAccGUGCcuccGCGCGCGAGC-GUGaCCu -3'
miRNA:   3'- -CGU--CACGcuu-CGUGCGCUCGuCAC-GG- -5'
23516 5' -55.6 NC_005259.1 + 53605 0.69 0.561078
Target:  5'- uGCucGU-CGggGUcagcagGCGuCGAGCGGUGCCg -3'
miRNA:   3'- -CGu-CAcGCuuCG------UGC-GCUCGUCACGG- -5'
23516 5' -55.6 NC_005259.1 + 59131 0.69 0.550445
Target:  5'- aGCAGaGCGucGAGCucgGC-AGCGGUGCCg -3'
miRNA:   3'- -CGUCaCGC--UUCGug-CGcUCGUCACGG- -5'
23516 5' -55.6 NC_005259.1 + 66107 0.69 0.550445
Target:  5'- cGCAcGcGCGAcuucuacGCGCGuCGAGCAG-GCCa -3'
miRNA:   3'- -CGU-CaCGCUu------CGUGC-GCUCGUCaCGG- -5'
23516 5' -55.6 NC_005259.1 + 36533 0.7 0.508604
Target:  5'- cGCGGUGUGA--CACGCGGGguGaucUGCg -3'
miRNA:   3'- -CGUCACGCUucGUGCGCUCguC---ACGg -5'
23516 5' -55.6 NC_005259.1 + 14513 0.7 0.508604
Target:  5'- uGCAcaccgGCG-AGCACGCGGuGCguuucGGUGCCg -3'
miRNA:   3'- -CGUca---CGCuUCGUGCGCU-CG-----UCACGG- -5'
23516 5' -55.6 NC_005259.1 + 26417 0.7 0.507575
Target:  5'- gGCGGUGCcgccguaGAAcGCAcCGcCGAGCGGgcggGCCg -3'
miRNA:   3'- -CGUCACG-------CUU-CGU-GC-GCUCGUCa---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.