Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23553 | 5' | -50.7 | NC_005260.1 | + | 49266 | 0.66 | 0.99888 |
Target: 5'- -aUAACCCAGauCGC-GGauacaCAAUCAcCGGCa -3' miRNA: 3'- caAUUGGGUU--GCGaCC-----GUUAGU-GCCG- -5' |
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23553 | 5' | -50.7 | NC_005260.1 | + | 165788 | 0.66 | 0.998647 |
Target: 5'- --aAACUCGAUGCaaUGGCGA--ACGGUg -3' miRNA: 3'- caaUUGGGUUGCG--ACCGUUagUGCCG- -5' |
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23553 | 5' | -50.7 | NC_005260.1 | + | 45358 | 0.66 | 0.998647 |
Target: 5'- --gAGCCaAGCGaCUGGCugaacUUGCGGCa -3' miRNA: 3'- caaUUGGgUUGC-GACCGuu---AGUGCCG- -5' |
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23553 | 5' | -50.7 | NC_005260.1 | + | 90761 | 0.66 | 0.998622 |
Target: 5'- -cUGACCCAACuaagggaGCUGGUAAUgGUGcGCu -3' miRNA: 3'- caAUUGGGUUG-------CGACCGUUAgUGC-CG- -5' |
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23553 | 5' | -50.7 | NC_005260.1 | + | 17613 | 0.66 | 0.998374 |
Target: 5'- --aAGCCCuGGCaCUGGCAAaacuacCAUGGCg -3' miRNA: 3'- caaUUGGG-UUGcGACCGUUa-----GUGCCG- -5' |
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23553 | 5' | -50.7 | NC_005260.1 | + | 226675 | 0.66 | 0.998374 |
Target: 5'- --aGACCCcaguuucaaAACGCUGGcCAcgCGauUGGCg -3' miRNA: 3'- caaUUGGG---------UUGCGACC-GUuaGU--GCCG- -5' |
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23553 | 5' | -50.7 | NC_005260.1 | + | 88810 | 0.66 | 0.998056 |
Target: 5'- -cUGACCCGACuuGCUGGCucUUugGa- -3' miRNA: 3'- caAUUGGGUUG--CGACCGuuAGugCcg -5' |
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23553 | 5' | -50.7 | NC_005260.1 | + | 152849 | 0.66 | 0.998056 |
Target: 5'- aGUguuCCCAAC--UGGCcuaGAUUACGGCa -3' miRNA: 3'- -CAauuGGGUUGcgACCG---UUAGUGCCG- -5' |
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23553 | 5' | -50.7 | NC_005260.1 | + | 37269 | 0.67 | 0.997263 |
Target: 5'- gGUUAuCUCGguGCGcCUGGUucucgcgcauuuAAUCGCGGCa -3' miRNA: 3'- -CAAUuGGGU--UGC-GACCG------------UUAGUGCCG- -5' |
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23553 | 5' | -50.7 | NC_005260.1 | + | 73586 | 0.67 | 0.995582 |
Target: 5'- ---cGCCC-ACGCUGGCAugcaAUCAUucGCg -3' miRNA: 3'- caauUGGGuUGCGACCGU----UAGUGc-CG- -5' |
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23553 | 5' | -50.7 | NC_005260.1 | + | 137974 | 0.67 | 0.995514 |
Target: 5'- --cAACCCAAgacauucCGCUGGUAAUacugguggUGCGGUa -3' miRNA: 3'- caaUUGGGUU-------GCGACCGUUA--------GUGCCG- -5' |
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23553 | 5' | -50.7 | NC_005260.1 | + | 203753 | 0.67 | 0.994939 |
Target: 5'- -gUAGCCCAGaucaccggauacaaaGCUGGCAuUCuuacCGGUa -3' miRNA: 3'- caAUUGGGUUg--------------CGACCGUuAGu---GCCG- -5' |
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23553 | 5' | -50.7 | NC_005260.1 | + | 54029 | 0.67 | 0.994863 |
Target: 5'- cUUGACCCuuagcaguUGCUucGGUAGUCuguGCGGCa -3' miRNA: 3'- cAAUUGGGuu------GCGA--CCGUUAG---UGCCG- -5' |
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23553 | 5' | -50.7 | NC_005260.1 | + | 222454 | 0.68 | 0.989723 |
Target: 5'- gGUUAACaCCGcCGgUGGUAGUCAaUGGUg -3' miRNA: 3'- -CAAUUG-GGUuGCgACCGUUAGU-GCCG- -5' |
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23553 | 5' | -50.7 | NC_005260.1 | + | 158681 | 0.69 | 0.98679 |
Target: 5'- --aGAgCCAACaucgGC-GGUGAUCACGGCu -3' miRNA: 3'- caaUUgGGUUG----CGaCCGUUAGUGCCG- -5' |
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23553 | 5' | -50.7 | NC_005260.1 | + | 47628 | 0.69 | 0.985101 |
Target: 5'- -aUggUCCGcaaGCUGGCcguGUCGCGGUu -3' miRNA: 3'- caAuuGGGUug-CGACCGu--UAGUGCCG- -5' |
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23553 | 5' | -50.7 | NC_005260.1 | + | 77874 | 0.7 | 0.976661 |
Target: 5'- aGUUGACUCAAUcaaauCUGGCAA-CAUGGUa -3' miRNA: 3'- -CAAUUGGGUUGc----GACCGUUaGUGCCG- -5' |
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23553 | 5' | -50.7 | NC_005260.1 | + | 193781 | 0.7 | 0.97409 |
Target: 5'- ---uGCUCcGCGUUGGCAugaaagAUUACGGCu -3' miRNA: 3'- caauUGGGuUGCGACCGU------UAGUGCCG- -5' |
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23553 | 5' | -50.7 | NC_005260.1 | + | 174357 | 0.7 | 0.968342 |
Target: 5'- -cUAACCCAACG--GGUGAUCGucCGGCu -3' miRNA: 3'- caAUUGGGUUGCgaCCGUUAGU--GCCG- -5' |
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23553 | 5' | -50.7 | NC_005260.1 | + | 227095 | 0.71 | 0.961741 |
Target: 5'- -aUAGCCUAcuucGCGCagGGUAAUguCGGCa -3' miRNA: 3'- caAUUGGGU----UGCGa-CCGUUAguGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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