miRNA display CGI


Results 41 - 60 of 791 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 3' -62.9 NC_005261.1 + 5826 0.75 0.166636
Target:  5'- gCGCGGGCCAG-GCGUcGGCgGCGGCc- -3'
miRNA:   3'- gGCGUCCGGUCgCGCA-CCG-CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 108054 0.75 0.158637
Target:  5'- gCCGCcucGGcGCgCAGCGCGgcgGGCGCGGCg- -3'
miRNA:   3'- -GGCG---UC-CG-GUCGCGCa--CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 49738 0.75 0.158637
Target:  5'- gCGCGGGUCgAGCGCGgcgcgcuccGGCGCGGCa- -3'
miRNA:   3'- gGCGUCCGG-UCGCGCa--------CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 54890 0.75 0.150986
Target:  5'- uCUGCGGGCCAcgguggcggcggGCgGCGUGGCGCcgcccgAGCUGc -3'
miRNA:   3'- -GGCGUCCGGU------------CG-CGCACCGCG------UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 20181 0.75 0.150986
Target:  5'- gCCGCGGccGCCAGCGCG-GGCGUcGCg- -3'
miRNA:   3'- -GGCGUC--CGGUCGCGCaCCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 134865 0.75 0.169519
Target:  5'- gCCGCgcucgcggcccugaAGGCCGGCGCGccgGGCGCcGCg- -3'
miRNA:   3'- -GGCG--------------UCCGGUCGCGCa--CCGCGuCGac -5'
23561 3' -62.9 NC_005261.1 + 71056 0.74 0.188232
Target:  5'- gCCGUGGGCCAgccgccGCGCGgcgGGCGgGGCg- -3'
miRNA:   3'- -GGCGUCCGGU------CGCGCa--CCGCgUCGac -5'
23561 3' -62.9 NC_005261.1 + 74343 0.74 0.192837
Target:  5'- aCCGCAGGCgCGGCgGCGgaaGGgGCGGCc- -3'
miRNA:   3'- -GGCGUCCG-GUCG-CGCa--CCgCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 99085 0.74 0.179312
Target:  5'- -gGCAGGgCGGCGCG-GcGCGCAGCg- -3'
miRNA:   3'- ggCGUCCgGUCGCGCaC-CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 79971 0.74 0.183724
Target:  5'- gCGC-GGCgAGCGCGgcgcGGCGCGGCa- -3'
miRNA:   3'- gGCGuCCGgUCGCGCa---CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 12302 0.74 0.188232
Target:  5'- gCCGCGGGCacgGGCGCGUagccggcgGGCGCGcGCUu -3'
miRNA:   3'- -GGCGUCCGg--UCGCGCA--------CCGCGU-CGAc -5'
23561 3' -62.9 NC_005261.1 + 29196 0.74 0.188232
Target:  5'- gCCGCGGcGCCcGCGCG-GGCGCGcGaCUGg -3'
miRNA:   3'- -GGCGUC-CGGuCGCGCaCCGCGU-C-GAC- -5'
23561 3' -62.9 NC_005261.1 + 34797 0.74 0.188232
Target:  5'- aCCGCgAGGCgCGcgcGCGCGUGGCcGCGGCc- -3'
miRNA:   3'- -GGCG-UCCG-GU---CGCGCACCG-CGUCGac -5'
23561 3' -62.9 NC_005261.1 + 75208 0.74 0.183724
Target:  5'- gCCGCGGgcGCCGGCGCccgcgcgGGCGCGGCc- -3'
miRNA:   3'- -GGCGUC--CGGUCGCGca-----CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 75165 0.74 0.183724
Target:  5'- gCCGCuguGcGCCAGCGaCGcGGCGCuGCUGc -3'
miRNA:   3'- -GGCGu--C-CGGUCGC-GCaCCGCGuCGAC- -5'
23561 3' -62.9 NC_005261.1 + 38516 0.74 0.183724
Target:  5'- aCGC-GGCCAcGCGCGcgaccgUGGCGgAGCUGg -3'
miRNA:   3'- gGCGuCCGGU-CGCGC------ACCGCgUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 64480 0.74 0.202343
Target:  5'- uUCGcCGGGUgCAGCGgGUGGCGCGGgUGc -3'
miRNA:   3'- -GGC-GUCCG-GUCGCgCACCGCGUCgAC- -5'
23561 3' -62.9 NC_005261.1 + 100791 0.74 0.19754
Target:  5'- uCCGCAGGCCAGCagguccCGgaagGGCGCGuGCg- -3'
miRNA:   3'- -GGCGUCCGGUCGc-----GCa---CCGCGU-CGac -5'
23561 3' -62.9 NC_005261.1 + 58276 0.74 0.192372
Target:  5'- gCCGCgcucacgGGGCCGGCGCGccggggGGCGCGGg-- -3'
miRNA:   3'- -GGCG-------UCCGGUCGCGCa-----CCGCGUCgac -5'
23561 3' -62.9 NC_005261.1 + 64018 0.74 0.183279
Target:  5'- gCGUAGGUgAGCGUGUucucgucGGCGCGGCUc -3'
miRNA:   3'- gGCGUCCGgUCGCGCA-------CCGCGUCGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.