miRNA display CGI


Results 61 - 80 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 64271 0.73 0.482789
Target:  5'- cAGaCGGccCGGGCGCGCCCcGCGUCUGc -3'
miRNA:   3'- -UC-GCUuuGCUUGUGCGGGaCGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 7594 0.73 0.492416
Target:  5'- cGGCG-AGCGcacGCGCGCCCcGCGCgCUGu -3'
miRNA:   3'- -UCGCuUUGCu--UGUGCGGGaCGCG-GAC- -5'
23565 3' -56.1 NC_005261.1 + 94584 0.73 0.492416
Target:  5'- gGGCGc--CGAACGCGCCCUcCGCCc- -3'
miRNA:   3'- -UCGCuuuGCUUGUGCGGGAcGCGGac -5'
23565 3' -56.1 NC_005261.1 + 54238 0.73 0.492416
Target:  5'- cGCGgcGCGcgcucaugugcAGCGCGCCCUGgCGCCg- -3'
miRNA:   3'- uCGCuuUGC-----------UUGUGCGGGAC-GCGGac -5'
23565 3' -56.1 NC_005261.1 + 71323 0.73 0.501156
Target:  5'- cGCGAGcacguagccggccGCGAGCGCGUCCUcggugaGCGCCg- -3'
miRNA:   3'- uCGCUU-------------UGCUUGUGCGGGA------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 23185 0.73 0.502131
Target:  5'- gGGCGAcAGCGAGCGCGCCgCgGgGCCc- -3'
miRNA:   3'- -UCGCU-UUGCUUGUGCGG-GaCgCGGac -5'
23565 3' -56.1 NC_005261.1 + 87571 0.73 0.502131
Target:  5'- cGCGGAcuuggGCGAGCGCGUUCgccgGCGCCa- -3'
miRNA:   3'- uCGCUU-----UGCUUGUGCGGGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 2454 0.73 0.502131
Target:  5'- -cCGAcAGCGGcACGCGCUCUGCGCCg- -3'
miRNA:   3'- ucGCU-UUGCU-UGUGCGGGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 127703 0.73 0.502131
Target:  5'- gGGCGAcAGCGAGCGCGCCgCgGgGCCc- -3'
miRNA:   3'- -UCGCU-UUGCUUGUGCGG-GaCgCGGac -5'
23565 3' -56.1 NC_005261.1 + 40308 0.73 0.510946
Target:  5'- uGGCGGccaguacAGCGGGgACGCCCgGCGCCc- -3'
miRNA:   3'- -UCGCU-------UUGCUUgUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 79071 0.73 0.511929
Target:  5'- gGGCuGggGCGGgcgccGCGCGCCCggggcGCGCCg- -3'
miRNA:   3'- -UCG-CuuUGCU-----UGUGCGGGa----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 42023 0.73 0.521805
Target:  5'- aGGcCGAucguCGGGCGCGCCCagUGCGCgUGg -3'
miRNA:   3'- -UC-GCUuu--GCUUGUGCGGG--ACGCGgAC- -5'
23565 3' -56.1 NC_005261.1 + 104471 0.73 0.521805
Target:  5'- cGCGGGccccGCGAGCGgGCCCggccccgGCGCCg- -3'
miRNA:   3'- uCGCUU----UGCUUGUgCGGGa------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 28879 0.72 0.531754
Target:  5'- uGCGgcGCGGACGcCGCcgCCUGCGCCc- -3'
miRNA:   3'- uCGCuuUGCUUGU-GCG--GGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 52679 0.72 0.531754
Target:  5'- gAGCGGGcccugcucGCGGGCGCGCCgCUGCcgGCCg- -3'
miRNA:   3'- -UCGCUU--------UGCUUGUGCGG-GACG--CGGac -5'
23565 3' -56.1 NC_005261.1 + 53259 0.72 0.531754
Target:  5'- cGGCGcaucGCGGACGCGCCC-GaCGCCUc -3'
miRNA:   3'- -UCGCuu--UGCUUGUGCGGGaC-GCGGAc -5'
23565 3' -56.1 NC_005261.1 + 80535 0.72 0.531754
Target:  5'- uGGaCGAGGCccuGCugGCCCUGUGCCc- -3'
miRNA:   3'- -UC-GCUUUGcu-UGugCGGGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 133396 0.72 0.531754
Target:  5'- uGCGgcGCGGACGcCGCcgCCUGCGCCc- -3'
miRNA:   3'- uCGCuuUGCUUGU-GCG--GGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 55647 0.72 0.531754
Target:  5'- cAGCGcAACGAGgACGCgCUGCGCgaGc -3'
miRNA:   3'- -UCGCuUUGCUUgUGCGgGACGCGgaC- -5'
23565 3' -56.1 NC_005261.1 + 74945 0.72 0.531754
Target:  5'- uGCGgcGCGGGCGCGCUCgGCGCgCUc -3'
miRNA:   3'- uCGCuuUGCUUGUGCGGGaCGCG-GAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.