miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 5' -57.1 NC_005261.1 + 40716 0.73 0.423303
Target:  5'- aAGCAGCgAGGggggcgcgUGGGCguaGCCCAUCAGc -3'
miRNA:   3'- -UCGUCG-UCCaa------GUCCGa--CGGGUAGUC- -5'
23566 5' -57.1 NC_005261.1 + 44294 0.7 0.548718
Target:  5'- cAGCGGCGGGccaGGGCcgcUGCCCG-CGGg -3'
miRNA:   3'- -UCGUCGUCCaagUCCG---ACGGGUaGUC- -5'
23566 5' -57.1 NC_005261.1 + 46060 0.66 0.827868
Target:  5'- gGGCAGCGGGaa-GGGCgccGCCUcgUGGc -3'
miRNA:   3'- -UCGUCGUCCaagUCCGa--CGGGuaGUC- -5'
23566 5' -57.1 NC_005261.1 + 48230 0.74 0.371462
Target:  5'- cAGCAgGCAGGUgaagacgCGGaucuGCUGCCCGUCAa -3'
miRNA:   3'- -UCGU-CGUCCAa------GUC----CGACGGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 48794 0.69 0.610604
Target:  5'- cAGCacGGCGGGcgCGGGgaGCCCggCGGc -3'
miRNA:   3'- -UCG--UCGUCCaaGUCCgaCGGGuaGUC- -5'
23566 5' -57.1 NC_005261.1 + 50159 0.67 0.773347
Target:  5'- cGCAGUcuGGGUUCAuGGCUcGgCCGgcgCAGg -3'
miRNA:   3'- uCGUCG--UCCAAGU-CCGA-CgGGUa--GUC- -5'
23566 5' -57.1 NC_005261.1 + 50344 0.66 0.810341
Target:  5'- cAGCAGCcgccGGU--AGGCcgcGCCCGUCAu -3'
miRNA:   3'- -UCGUCGu---CCAagUCCGa--CGGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 50522 0.69 0.641871
Target:  5'- cGCAGCAGGgccgucgUCuuGCccgaGCCCAUCGGc -3'
miRNA:   3'- uCGUCGUCCa------AGucCGa---CGGGUAGUC- -5'
23566 5' -57.1 NC_005261.1 + 54079 0.67 0.724235
Target:  5'- uGGUGGCAGGggCGuGGCcgagGCCCGcCAGc -3'
miRNA:   3'- -UCGUCGUCCaaGU-CCGa---CGGGUaGUC- -5'
23566 5' -57.1 NC_005261.1 + 54491 0.71 0.538571
Target:  5'- gGGCGGCAGGcgcaaacgCAGGC-GCCCuccggcgacggcGUCAGa -3'
miRNA:   3'- -UCGUCGUCCaa------GUCCGaCGGG------------UAGUC- -5'
23566 5' -57.1 NC_005261.1 + 58996 0.7 0.589829
Target:  5'- gGGCGGC-GGUgcgcCGGGCUcGCCCAgCGGc -3'
miRNA:   3'- -UCGUCGuCCAa---GUCCGA-CGGGUaGUC- -5'
23566 5' -57.1 NC_005261.1 + 60069 0.66 0.827868
Target:  5'- cGGCGGCcGGUccgCGGGCUGCgUGggCAGc -3'
miRNA:   3'- -UCGUCGuCCAa--GUCCGACGgGUa-GUC- -5'
23566 5' -57.1 NC_005261.1 + 62024 0.68 0.714127
Target:  5'- cGGC-GCAGGcgC-GGCUGCUgCAUCAGc -3'
miRNA:   3'- -UCGuCGUCCaaGuCCGACGG-GUAGUC- -5'
23566 5' -57.1 NC_005261.1 + 63964 0.71 0.488922
Target:  5'- cGCAGCuGGUgcgucagcgccagCGGGCUcagcuugaaguagccGCCCAUCAGc -3'
miRNA:   3'- uCGUCGuCCAa------------GUCCGA---------------CGGGUAGUC- -5'
23566 5' -57.1 NC_005261.1 + 64489 0.72 0.441523
Target:  5'- uGCAGCGGGUggcgCGGGUgcucgggGCCCG-CGGg -3'
miRNA:   3'- uCGUCGUCCAa---GUCCGa------CGGGUaGUC- -5'
23566 5' -57.1 NC_005261.1 + 65394 0.71 0.488922
Target:  5'- uGCGGCGGGUU-GGGCgGCCCcggCAGc -3'
miRNA:   3'- uCGUCGUCCAAgUCCGaCGGGua-GUC- -5'
23566 5' -57.1 NC_005261.1 + 65790 0.69 0.639786
Target:  5'- cGCGGCGGGaacauccgcgggUCGGGgUGCCCGggCGGc -3'
miRNA:   3'- uCGUCGUCCa-----------AGUCCgACGGGUa-GUC- -5'
23566 5' -57.1 NC_005261.1 + 68789 0.66 0.827868
Target:  5'- cGCAGCucGUcCGcGCUGCCCGUCu- -3'
miRNA:   3'- uCGUCGucCAaGUcCGACGGGUAGuc -5'
23566 5' -57.1 NC_005261.1 + 69691 0.68 0.714127
Target:  5'- cGCAGCAGGgggcgcgCGGGCgccggcgGCgCCggCAGg -3'
miRNA:   3'- uCGUCGUCCaa-----GUCCGa------CG-GGuaGUC- -5'
23566 5' -57.1 NC_005261.1 + 70039 0.69 0.631445
Target:  5'- cGGCGGCGGGggCgAGGggGCCCG-CGGc -3'
miRNA:   3'- -UCGUCGUCCaaG-UCCgaCGGGUaGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.