miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 5' -57.1 NC_005261.1 + 21587 0.71 0.518479
Target:  5'- cGGCGGCGGGcgcgCGGGCcucGCCCucGUCGGc -3'
miRNA:   3'- -UCGUCGUCCaa--GUCCGa--CGGG--UAGUC- -5'
23566 5' -57.1 NC_005261.1 + 21824 0.7 0.544652
Target:  5'- cGCGGCGGGcgcgcgugcgggCGGGCUcGCCCcgCAGc -3'
miRNA:   3'- uCGUCGUCCaa----------GUCCGA-CGGGuaGUC- -5'
23566 5' -57.1 NC_005261.1 + 22225 0.71 0.508544
Target:  5'- cGGCGGCucAGGccgccUCGGGCgGCUCGUCAGc -3'
miRNA:   3'- -UCGUCG--UCCa----AGUCCGaCGGGUAGUC- -5'
23566 5' -57.1 NC_005261.1 + 23562 0.67 0.773347
Target:  5'- cGCAGguGGggCAgGGCUGgCCGUg-- -3'
miRNA:   3'- uCGUCguCCaaGU-CCGACgGGUAguc -5'
23566 5' -57.1 NC_005261.1 + 23631 0.66 0.810341
Target:  5'- cGCGGCGGGggUCGGGCgGCUgGaaGGg -3'
miRNA:   3'- uCGUCGUCCa-AGUCCGaCGGgUagUC- -5'
23566 5' -57.1 NC_005261.1 + 23805 0.66 0.801322
Target:  5'- aGGcCGGCuGGggCGGGCUuGCCCcgggCGGg -3'
miRNA:   3'- -UC-GUCGuCCaaGUCCGA-CGGGua--GUC- -5'
23566 5' -57.1 NC_005261.1 + 23862 0.66 0.801322
Target:  5'- aGGcCGGCuGGggCGGGCUuGCCCcgggCGGg -3'
miRNA:   3'- -UC-GUCGuCCaaGUCCGA-CGGGua--GUC- -5'
23566 5' -57.1 NC_005261.1 + 23943 0.66 0.792143
Target:  5'- cGCGGCGGGUUCGGGg---UCGUCGGc -3'
miRNA:   3'- uCGUCGUCCAAGUCCgacgGGUAGUC- -5'
23566 5' -57.1 NC_005261.1 + 24628 0.67 0.744195
Target:  5'- uGGcCAGCGGGUgccCGGGCgcgaggucGCCCAgcgCGGc -3'
miRNA:   3'- -UC-GUCGUCCAa--GUCCGa-------CGGGUa--GUC- -5'
23566 5' -57.1 NC_005261.1 + 24755 0.8 0.160671
Target:  5'- cAGCGGCAGGUUCGGGCgcagcagcucgccGCUCAUCGu -3'
miRNA:   3'- -UCGUCGUCCAAGUCCGa------------CGGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 25337 0.68 0.701903
Target:  5'- cGCGGCAGGUUgacgcuggcCAGGUUGCacacgccgugggCGUCGGg -3'
miRNA:   3'- uCGUCGUCCAA---------GUCCGACGg-----------GUAGUC- -5'
23566 5' -57.1 NC_005261.1 + 26979 0.68 0.673065
Target:  5'- cAGCGGCAGGU---GGCcuggGCCCGgccgCGGg -3'
miRNA:   3'- -UCGUCGUCCAaguCCGa---CGGGUa---GUC- -5'
23566 5' -57.1 NC_005261.1 + 27048 0.68 0.693703
Target:  5'- uGGgGGCGGGaagCAGGaaGCCCcaGUCAGg -3'
miRNA:   3'- -UCgUCGUCCaa-GUCCgaCGGG--UAGUC- -5'
23566 5' -57.1 NC_005261.1 + 27367 0.66 0.792143
Target:  5'- cAGCGGUAGGccgCGcGGCUGUUCGcCAGg -3'
miRNA:   3'- -UCGUCGUCCaa-GU-CCGACGGGUaGUC- -5'
23566 5' -57.1 NC_005261.1 + 27917 0.67 0.728256
Target:  5'- cGGCGGCGcGGUUgccguacucggcggcCAGGC-GCCCGcCAGg -3'
miRNA:   3'- -UCGUCGU-CCAA---------------GUCCGaCGGGUaGUC- -5'
23566 5' -57.1 NC_005261.1 + 28688 0.67 0.754027
Target:  5'- cGCGGC-GGUUguGGCgaggggGCCCGcggCGGg -3'
miRNA:   3'- uCGUCGuCCAAguCCGa-----CGGGUa--GUC- -5'
23566 5' -57.1 NC_005261.1 + 28735 0.66 0.810341
Target:  5'- cGCGGCGGGcgCGGGCcccgGCCauuugcgcUCGGg -3'
miRNA:   3'- uCGUCGUCCaaGUCCGa---CGGgu------AGUC- -5'
23566 5' -57.1 NC_005261.1 + 33616 0.66 0.792143
Target:  5'- gGGCGGCGGGgcccggGGGCgcGCCCcgCAc -3'
miRNA:   3'- -UCGUCGUCCaag---UCCGa-CGGGuaGUc -5'
23566 5' -57.1 NC_005261.1 + 37849 0.66 0.827868
Target:  5'- cGGCGGCGuGGUggAGGCgGCCUcgGUCGc -3'
miRNA:   3'- -UCGUCGU-CCAagUCCGaCGGG--UAGUc -5'
23566 5' -57.1 NC_005261.1 + 38659 0.77 0.237388
Target:  5'- aAGCGGCGGGUgCGGGCccggGCCCGcCAGu -3'
miRNA:   3'- -UCGUCGUCCAaGUCCGa---CGGGUaGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.