miRNA display CGI


Results 21 - 40 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 5' -57.1 NC_005261.1 + 90230 0.71 0.518479
Target:  5'- cGCGGCGGG--CGGGC-GCgCCGUCGGg -3'
miRNA:   3'- uCGUCGUCCaaGUCCGaCG-GGUAGUC- -5'
23566 5' -57.1 NC_005261.1 + 21587 0.71 0.518479
Target:  5'- cGGCGGCGGGcgcgCGGGCcucGCCCucGUCGGc -3'
miRNA:   3'- -UCGUCGUCCaa--GUCCGa--CGGG--UAGUC- -5'
23566 5' -57.1 NC_005261.1 + 107129 0.71 0.538571
Target:  5'- cGGCGGCGGGgccgcCGGGCggcaugggGCCCAgcacgCGGg -3'
miRNA:   3'- -UCGUCGUCCaa---GUCCGa-------CGGGUa----GUC- -5'
23566 5' -57.1 NC_005261.1 + 54491 0.71 0.538571
Target:  5'- gGGCGGCAGGcgcaaacgCAGGC-GCCCuccggcgacggcGUCAGa -3'
miRNA:   3'- -UCGUCGUCCaa------GUCCGaCGGG------------UAGUC- -5'
23566 5' -57.1 NC_005261.1 + 2612 0.71 0.538571
Target:  5'- cGGCGGCGGGgccgcCGGGCggcaugggGCCCAgcacgCGGg -3'
miRNA:   3'- -UCGUCGUCCaa---GUCCGa-------CGGGUa----GUC- -5'
23566 5' -57.1 NC_005261.1 + 126341 0.7 0.544652
Target:  5'- cGCGGCGGGcgcgcgugcgggCGGGCUcGCCCcgCAGc -3'
miRNA:   3'- uCGUCGUCCaa----------GUCCGA-CGGGuaGUC- -5'
23566 5' -57.1 NC_005261.1 + 21824 0.7 0.544652
Target:  5'- cGCGGCGGGcgcgcgugcgggCGGGCUcGCCCcgCAGc -3'
miRNA:   3'- uCGUCGUCCaa----------GUCCGA-CGGGuaGUC- -5'
23566 5' -57.1 NC_005261.1 + 44294 0.7 0.548718
Target:  5'- cAGCGGCGGGccaGGGCcgcUGCCCG-CGGg -3'
miRNA:   3'- -UCGUCGUCCaagUCCG---ACGGGUaGUC- -5'
23566 5' -57.1 NC_005261.1 + 6398 0.7 0.558923
Target:  5'- cGCAGCAGG--CGGGC-GCCgCGUCAa -3'
miRNA:   3'- uCGUCGUCCaaGUCCGaCGG-GUAGUc -5'
23566 5' -57.1 NC_005261.1 + 108964 0.7 0.569182
Target:  5'- cAGCAGCGGGcccUCcagcGGCggcgGCCCGUCGc -3'
miRNA:   3'- -UCGUCGUCCa--AGu---CCGa---CGGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 4447 0.7 0.569182
Target:  5'- cAGCAGCGGGcccUCcagcGGCggcgGCCCGUCGc -3'
miRNA:   3'- -UCGUCGUCCa--AGu---CCGa---CGGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 88175 0.7 0.579486
Target:  5'- cGGCAGCGGGcuucucgcggCGGcGCUGCaCCGUCGc -3'
miRNA:   3'- -UCGUCGUCCaa--------GUC-CGACG-GGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 123236 0.7 0.579486
Target:  5'- uAGCGGCcgcccAGGcgCGGGCcccGCCCAUCGc -3'
miRNA:   3'- -UCGUCG-----UCCaaGUCCGa--CGGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 129733 0.7 0.589829
Target:  5'- cAGCGGCAGGgc--GGCgggGCCCGgccuUCAGc -3'
miRNA:   3'- -UCGUCGUCCaaguCCGa--CGGGU----AGUC- -5'
23566 5' -57.1 NC_005261.1 + 58996 0.7 0.589829
Target:  5'- gGGCGGC-GGUgcgcCGGGCUcGCCCAgCGGc -3'
miRNA:   3'- -UCGUCGuCCAa---GUCCGA-CGGGUaGUC- -5'
23566 5' -57.1 NC_005261.1 + 125638 0.7 0.589829
Target:  5'- cAGCAGCuGGUUgAGGCgGUCCccCAGc -3'
miRNA:   3'- -UCGUCGuCCAAgUCCGaCGGGuaGUC- -5'
23566 5' -57.1 NC_005261.1 + 109871 0.7 0.600204
Target:  5'- gGGCAGCGGGgcccgCGGGCgggcGCCC--CGGg -3'
miRNA:   3'- -UCGUCGUCCaa---GUCCGa---CGGGuaGUC- -5'
23566 5' -57.1 NC_005261.1 + 48794 0.69 0.610604
Target:  5'- cAGCacGGCGGGcgCGGGgaGCCCggCGGc -3'
miRNA:   3'- -UCG--UCGUCCaaGUCCgaCGGGuaGUC- -5'
23566 5' -57.1 NC_005261.1 + 99829 0.69 0.610604
Target:  5'- cAGCGGCgAGGggu-GGCUGUgCGUCAGc -3'
miRNA:   3'- -UCGUCG-UCCaaguCCGACGgGUAGUC- -5'
23566 5' -57.1 NC_005261.1 + 70039 0.69 0.631445
Target:  5'- cGGCGGCGGGggCgAGGggGCCCG-CGGc -3'
miRNA:   3'- -UCGUCGUCCaaG-UCCgaCGGGUaGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.