miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 5' -57.1 NC_005261.1 + 20039 0.66 0.801322
Target:  5'- cGCGGCAGGcgCGGG--GCCCG-CGGc -3'
miRNA:   3'- uCGUCGUCCaaGUCCgaCGGGUaGUC- -5'
23566 5' -57.1 NC_005261.1 + 128379 0.66 0.801322
Target:  5'- aGGcCGGCuGGggCGGGCUuGCCCcgggCGGg -3'
miRNA:   3'- -UC-GUCGuCCaaGUCCGA-CGGGua--GUC- -5'
23566 5' -57.1 NC_005261.1 + 128322 0.66 0.801322
Target:  5'- aGGcCGGCuGGggCGGGCUuGCCCcgggCGGg -3'
miRNA:   3'- -UC-GUCGuCCaaGUCCGA-CGGGua--GUC- -5'
23566 5' -57.1 NC_005261.1 + 68789 0.66 0.827868
Target:  5'- cGCAGCucGUcCGcGCUGCCCGUCu- -3'
miRNA:   3'- uCGUCGucCAaGUcCGACGGGUAGuc -5'
23566 5' -57.1 NC_005261.1 + 128148 0.66 0.810341
Target:  5'- cGCGGCGGGggUCGGGCgGCUgGaaGGg -3'
miRNA:   3'- uCGUCGUCCa-AGUCCGaCGGgUagUC- -5'
23566 5' -57.1 NC_005261.1 + 37849 0.66 0.827868
Target:  5'- cGGCGGCGuGGUggAGGCgGCCUcgGUCGc -3'
miRNA:   3'- -UCGUCGU-CCAagUCCGaCGGG--UAGUc -5'
23566 5' -57.1 NC_005261.1 + 112052 0.66 0.827868
Target:  5'- cGGgAGCcGGccUUCGGGCgUGCCCucGUCGGc -3'
miRNA:   3'- -UCgUCGuCC--AAGUCCG-ACGGG--UAGUC- -5'
23566 5' -57.1 NC_005261.1 + 60069 0.66 0.827868
Target:  5'- cGGCGGCcGGUccgCGGGCUGCgUGggCAGc -3'
miRNA:   3'- -UCGUCGuCCAa--GUCCGACGgGUa-GUC- -5'
23566 5' -57.1 NC_005261.1 + 82295 0.66 0.827868
Target:  5'- uGCAGCGcccg-AGGCUGUCCAUCGa -3'
miRNA:   3'- uCGUCGUccaagUCCGACGGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 9624 0.66 0.827868
Target:  5'- gGGCAgGCGGGggUgggggcuggguGGGCgggGCCCAcUCGGg -3'
miRNA:   3'- -UCGU-CGUCCaaG-----------UCCGa--CGGGU-AGUC- -5'
23566 5' -57.1 NC_005261.1 + 98199 0.66 0.801322
Target:  5'- cGCGGCGGGcagCGGGCgccGCCaCggCAGc -3'
miRNA:   3'- uCGUCGUCCaa-GUCCGa--CGG-GuaGUC- -5'
23566 5' -57.1 NC_005261.1 + 50159 0.67 0.773347
Target:  5'- cGCAGUcuGGGUUCAuGGCUcGgCCGgcgCAGg -3'
miRNA:   3'- uCGUCG--UCCAAGU-CCGA-CgGGUa--GUC- -5'
23566 5' -57.1 NC_005261.1 + 128079 0.67 0.773347
Target:  5'- cGCAGguGGggCAgGGCUGgCCGUg-- -3'
miRNA:   3'- uCGUCguCCaaGU-CCGACgGGUAguc -5'
23566 5' -57.1 NC_005261.1 + 28688 0.67 0.754027
Target:  5'- cGCGGC-GGUUguGGCgaggggGCCCGcggCGGg -3'
miRNA:   3'- uCGUCGuCCAAguCCGa-----CGGGUa--GUC- -5'
23566 5' -57.1 NC_005261.1 + 78211 0.67 0.744195
Target:  5'- cGGCGGCGGGcucUUCGuguccCUGCCCGUCGc -3'
miRNA:   3'- -UCGUCGUCC---AAGUcc---GACGGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 27917 0.67 0.728256
Target:  5'- cGGCGGCGcGGUUgccguacucggcggcCAGGC-GCCCGcCAGg -3'
miRNA:   3'- -UCGUCGU-CCAA---------------GUCCGaCGGGUaGUC- -5'
23566 5' -57.1 NC_005261.1 + 54079 0.67 0.724235
Target:  5'- uGGUGGCAGGggCGuGGCcgagGCCCGcCAGc -3'
miRNA:   3'- -UCGUCGUCCaaGU-CCGa---CGGGUaGUC- -5'
23566 5' -57.1 NC_005261.1 + 99227 0.67 0.773347
Target:  5'- cGCGGCAGGcgCGucGGCgucgcGCCCGcCGGg -3'
miRNA:   3'- uCGUCGUCCaaGU--CCGa----CGGGUaGUC- -5'
23566 5' -57.1 NC_005261.1 + 107724 0.67 0.773347
Target:  5'- cGCGGCAGGc---GGCUGCgCC-UCGGc -3'
miRNA:   3'- uCGUCGUCCaaguCCGACG-GGuAGUC- -5'
23566 5' -57.1 NC_005261.1 + 24628 0.67 0.744195
Target:  5'- uGGcCAGCGGGUgccCGGGCgcgaggucGCCCAgcgCGGc -3'
miRNA:   3'- -UC-GUCGUCCAa--GUCCGa-------CGGGUa--GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.