Results 1 - 20 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23566 | 5' | -57.1 | NC_005261.1 | + | 113659 | 0.66 | 0.800411 |
Target: 5'- cGGguGCAGGcaaaUCGGGCUgggaccuggcgccGCCCGgcCAGg -3' miRNA: 3'- -UCguCGUCCa---AGUCCGA-------------CGGGUa-GUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 60069 | 0.66 | 0.827868 |
Target: 5'- cGGCGGCcGGUccgCGGGCUGCgUGggCAGc -3' miRNA: 3'- -UCGUCGuCCAa--GUCCGACGgGUa-GUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 27367 | 0.66 | 0.792143 |
Target: 5'- cAGCGGUAGGccgCGcGGCUGUUCGcCAGg -3' miRNA: 3'- -UCGUCGUCCaa-GU-CCGACGGGUaGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 138133 | 0.66 | 0.792143 |
Target: 5'- gGGCGGCGGGgcccggGGGCgcGCCCcgCAc -3' miRNA: 3'- -UCGUCGUCCaag---UCCGa-CGGGuaGUc -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 112052 | 0.66 | 0.827868 |
Target: 5'- cGGgAGCcGGccUUCGGGCgUGCCCucGUCGGc -3' miRNA: 3'- -UCgUCGuCC--AAGUCCG-ACGGG--UAGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 86191 | 0.66 | 0.782815 |
Target: 5'- gAGCGGCGGGcggggCGGGCguugGCCUcgUAc -3' miRNA: 3'- -UCGUCGUCCaa---GUCCGa---CGGGuaGUc -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 450 | 0.66 | 0.792143 |
Target: 5'- gGGCGGCGGGgcccggGGGCgcGCCCcgCAc -3' miRNA: 3'- -UCGUCGUCCaag---UCCGa-CGGGuaGUc -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 2686 | 0.66 | 0.792143 |
Target: 5'- cAGgGGCAGGUUCuuGGCggcaacgaacuUGCaccaCGUCAGg -3' miRNA: 3'- -UCgUCGUCCAAGu-CCG-----------ACGg---GUAGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 6441 | 0.66 | 0.801322 |
Target: 5'- cGCGGCGGGcgC-GGCgucgggGCCCAgCGGc -3' miRNA: 3'- uCGUCGUCCaaGuCCGa-----CGGGUaGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 9624 | 0.66 | 0.827868 |
Target: 5'- gGGCAgGCGGGggUgggggcuggguGGGCgggGCCCAcUCGGg -3' miRNA: 3'- -UCGU-CGUCCaaG-----------UCCGa--CGGGU-AGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 68789 | 0.66 | 0.827868 |
Target: 5'- cGCAGCucGUcCGcGCUGCCCGUCu- -3' miRNA: 3'- uCGUCGucCAaGUcCGACGGGUAGuc -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 20039 | 0.66 | 0.801322 |
Target: 5'- cGCGGCAGGcgCGGG--GCCCG-CGGc -3' miRNA: 3'- uCGUCGUCCaaGUCCgaCGGGUaGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 128379 | 0.66 | 0.801322 |
Target: 5'- aGGcCGGCuGGggCGGGCUuGCCCcgggCGGg -3' miRNA: 3'- -UC-GUCGuCCaaGUCCGA-CGGGua--GUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 37849 | 0.66 | 0.827868 |
Target: 5'- cGGCGGCGuGGUggAGGCgGCCUcgGUCGc -3' miRNA: 3'- -UCGUCGU-CCAagUCCGaCGGG--UAGUc -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 128322 | 0.66 | 0.801322 |
Target: 5'- aGGcCGGCuGGggCGGGCUuGCCCcgggCGGg -3' miRNA: 3'- -UC-GUCGuCCaaGUCCGA-CGGGua--GUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 46060 | 0.66 | 0.827868 |
Target: 5'- gGGCAGCGGGaa-GGGCgccGCCUcgUGGc -3' miRNA: 3'- -UCGUCGUCCaagUCCGa--CGGGuaGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 82295 | 0.66 | 0.827868 |
Target: 5'- uGCAGCGcccg-AGGCUGUCCAUCGa -3' miRNA: 3'- uCGUCGUccaagUCCGACGGGUAGUc -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 128148 | 0.66 | 0.810341 |
Target: 5'- cGCGGCGGGggUCGGGCgGCUgGaaGGg -3' miRNA: 3'- uCGUCGUCCa-AGUCCGaCGGgUagUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 114141 | 0.66 | 0.827868 |
Target: 5'- gGGCAgGCGGGggUgggggcuggguGGGCgggGCCCAcUCGGg -3' miRNA: 3'- -UCGU-CGUCCaaG-----------UCCGa--CGGGU-AGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 28735 | 0.66 | 0.810341 |
Target: 5'- cGCGGCGGGcgCGGGCcccgGCCauuugcgcUCGGg -3' miRNA: 3'- uCGUCGUCCaaGUCCGa---CGGgu------AGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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