Results 41 - 60 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23566 | 5' | -57.1 | NC_005261.1 | + | 65790 | 0.69 | 0.639786 |
Target: 5'- cGCGGCGGGaacauccgcgggUCGGGgUGCCCGggCGGc -3' miRNA: 3'- uCGUCGUCCa-----------AGUCCgACGGGUa-GUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 50522 | 0.69 | 0.641871 |
Target: 5'- cGCAGCAGGgccgucgUCuuGCccgaGCCCAUCGGc -3' miRNA: 3'- uCGUCGUCCa------AGucCGa---CGGGUAGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 18381 | 0.69 | 0.641871 |
Target: 5'- gAGCgcacGGuCAGGggCAGGCUGCCgggGUCGGc -3' miRNA: 3'- -UCG----UC-GUCCaaGUCCGACGGg--UAGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 9103 | 0.69 | 0.642913 |
Target: 5'- aAGCGGCAGGgcuccccagggggcCAGGCUGUCgG-CAGg -3' miRNA: 3'- -UCGUCGUCCaa------------GUCCGACGGgUaGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 4078 | 0.69 | 0.66269 |
Target: 5'- cAGCAGCcccGGGUggcgcCAGGCgcaGCCCAggGGg -3' miRNA: 3'- -UCGUCG---UCCAa----GUCCGa--CGGGUagUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 12769 | 0.69 | 0.66269 |
Target: 5'- aGGCGGC-GGUggCGGGggGCUCGUCGGc -3' miRNA: 3'- -UCGUCGuCCAa-GUCCgaCGGGUAGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 26979 | 0.68 | 0.673065 |
Target: 5'- cAGCGGCAGGU---GGCcuggGCCCGgccgCGGg -3' miRNA: 3'- -UCGUCGUCCAaguCCGa---CGGGUa---GUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 3719 | 0.68 | 0.673065 |
Target: 5'- cAGCuGCAGGcgCAGGCUGUgCUcgUAGu -3' miRNA: 3'- -UCGuCGUCCaaGUCCGACG-GGuaGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 107260 | 0.68 | 0.683406 |
Target: 5'- gGGCGcGCGGGcaCGGGCgggcGCgCAUCAGg -3' miRNA: 3'- -UCGU-CGUCCaaGUCCGa---CGgGUAGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 27048 | 0.68 | 0.693703 |
Target: 5'- uGGgGGCGGGaagCAGGaaGCCCcaGUCAGg -3' miRNA: 3'- -UCgUCGUCCaa-GUCCgaCGGG--UAGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 131566 | 0.68 | 0.693703 |
Target: 5'- uGGgGGCGGGaagCAGGaaGCCCcaGUCAGg -3' miRNA: 3'- -UCgUCGUCCaa-GUCCgaCGGG--UAGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 25337 | 0.68 | 0.701903 |
Target: 5'- cGCGGCAGGUUgacgcuggcCAGGUUGCacacgccgugggCGUCGGg -3' miRNA: 3'- uCGUCGUCCAA---------GUCCGACGg-----------GUAGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 121437 | 0.68 | 0.703947 |
Target: 5'- gGGCGGCGGGg-CGGGCauggGgCCGUCGa -3' miRNA: 3'- -UCGUCGUCCaaGUCCGa---CgGGUAGUc -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 121500 | 0.68 | 0.703947 |
Target: 5'- gGGCGGCGGGg-CGGGCauggGgCCGUCGa -3' miRNA: 3'- -UCGUCGUCCaaGUCCGa---CgGGUAGUc -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 90783 | 0.68 | 0.714127 |
Target: 5'- cGCaAGCGGGc-CGGGC-GCCUGUCGGa -3' miRNA: 3'- uCG-UCGUCCaaGUCCGaCGGGUAGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 5368 | 0.68 | 0.714127 |
Target: 5'- --gGGCAGGcgCAGGCUguGCCCGUg-- -3' miRNA: 3'- ucgUCGUCCaaGUCCGA--CGGGUAguc -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 69691 | 0.68 | 0.714127 |
Target: 5'- cGCAGCAGGgggcgcgCGGGCgccggcgGCgCCggCAGg -3' miRNA: 3'- uCGUCGUCCaa-----GUCCGa------CG-GGuaGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 62024 | 0.68 | 0.714127 |
Target: 5'- cGGC-GCAGGcgC-GGCUGCUgCAUCAGc -3' miRNA: 3'- -UCGuCGUCCaaGuCCGACGG-GUAGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 110955 | 0.68 | 0.714127 |
Target: 5'- gGGCGGUccgGGGgccggcCGGGCUGCCCG-CAc -3' miRNA: 3'- -UCGUCG---UCCaa----GUCCGACGGGUaGUc -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 6438 | 0.68 | 0.714127 |
Target: 5'- gGGCGGUccgGGGgccggcCGGGCUGCCCG-CAc -3' miRNA: 3'- -UCGUCG---UCCaa----GUCCGACGGGUaGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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