miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 5' -57.1 NC_005261.1 + 78211 0.67 0.744195
Target:  5'- cGGCGGCGGGcucUUCGuguccCUGCCCGUCGc -3'
miRNA:   3'- -UCGUCGUCC---AAGUcc---GACGGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 127871 0.67 0.734261
Target:  5'- gGGCacgAGCGGGagUCGcgccGGC-GCCCGUCGGg -3'
miRNA:   3'- -UCG---UCGUCCa-AGU----CCGaCGGGUAGUC- -5'
23566 5' -57.1 NC_005261.1 + 27917 0.67 0.728256
Target:  5'- cGGCGGCGcGGUUgccguacucggcggcCAGGC-GCCCGcCAGg -3'
miRNA:   3'- -UCGUCGU-CCAA---------------GUCCGaCGGGUaGUC- -5'
23566 5' -57.1 NC_005261.1 + 54079 0.67 0.724235
Target:  5'- uGGUGGCAGGggCGuGGCcgagGCCCGcCAGc -3'
miRNA:   3'- -UCGUCGUCCaaGU-CCGa---CGGGUaGUC- -5'
23566 5' -57.1 NC_005261.1 + 6438 0.68 0.714127
Target:  5'- gGGCGGUccgGGGgccggcCGGGCUGCCCG-CAc -3'
miRNA:   3'- -UCGUCG---UCCaa----GUCCGACGGGUaGUc -5'
23566 5' -57.1 NC_005261.1 + 5368 0.68 0.714127
Target:  5'- --gGGCAGGcgCAGGCUguGCCCGUg-- -3'
miRNA:   3'- ucgUCGUCCaaGUCCGA--CGGGUAguc -5'
23566 5' -57.1 NC_005261.1 + 90783 0.68 0.714127
Target:  5'- cGCaAGCGGGc-CGGGC-GCCUGUCGGa -3'
miRNA:   3'- uCG-UCGUCCaaGUCCGaCGGGUAGUC- -5'
23566 5' -57.1 NC_005261.1 + 110955 0.68 0.714127
Target:  5'- gGGCGGUccgGGGgccggcCGGGCUGCCCG-CAc -3'
miRNA:   3'- -UCGUCG---UCCaa----GUCCGACGGGUaGUc -5'
23566 5' -57.1 NC_005261.1 + 62024 0.68 0.714127
Target:  5'- cGGC-GCAGGcgC-GGCUGCUgCAUCAGc -3'
miRNA:   3'- -UCGuCGUCCaaGuCCGACGG-GUAGUC- -5'
23566 5' -57.1 NC_005261.1 + 69691 0.68 0.714127
Target:  5'- cGCAGCAGGgggcgcgCGGGCgccggcgGCgCCggCAGg -3'
miRNA:   3'- uCGUCGUCCaa-----GUCCGa------CG-GGuaGUC- -5'
23566 5' -57.1 NC_005261.1 + 121437 0.68 0.703947
Target:  5'- gGGCGGCGGGg-CGGGCauggGgCCGUCGa -3'
miRNA:   3'- -UCGUCGUCCaaGUCCGa---CgGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 121500 0.68 0.703947
Target:  5'- gGGCGGCGGGg-CGGGCauggGgCCGUCGa -3'
miRNA:   3'- -UCGUCGUCCaaGUCCGa---CgGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 25337 0.68 0.701903
Target:  5'- cGCGGCAGGUUgacgcuggcCAGGUUGCacacgccgugggCGUCGGg -3'
miRNA:   3'- uCGUCGUCCAA---------GUCCGACGg-----------GUAGUC- -5'
23566 5' -57.1 NC_005261.1 + 131566 0.68 0.693703
Target:  5'- uGGgGGCGGGaagCAGGaaGCCCcaGUCAGg -3'
miRNA:   3'- -UCgUCGUCCaa-GUCCgaCGGG--UAGUC- -5'
23566 5' -57.1 NC_005261.1 + 27048 0.68 0.693703
Target:  5'- uGGgGGCGGGaagCAGGaaGCCCcaGUCAGg -3'
miRNA:   3'- -UCgUCGUCCaa-GUCCgaCGGG--UAGUC- -5'
23566 5' -57.1 NC_005261.1 + 107260 0.68 0.683406
Target:  5'- gGGCGcGCGGGcaCGGGCgggcGCgCAUCAGg -3'
miRNA:   3'- -UCGU-CGUCCaaGUCCGa---CGgGUAGUC- -5'
23566 5' -57.1 NC_005261.1 + 3719 0.68 0.673065
Target:  5'- cAGCuGCAGGcgCAGGCUGUgCUcgUAGu -3'
miRNA:   3'- -UCGuCGUCCaaGUCCGACG-GGuaGUC- -5'
23566 5' -57.1 NC_005261.1 + 26979 0.68 0.673065
Target:  5'- cAGCGGCAGGU---GGCcuggGCCCGgccgCGGg -3'
miRNA:   3'- -UCGUCGUCCAaguCCGa---CGGGUa---GUC- -5'
23566 5' -57.1 NC_005261.1 + 12769 0.69 0.66269
Target:  5'- aGGCGGC-GGUggCGGGggGCUCGUCGGc -3'
miRNA:   3'- -UCGUCGuCCAa-GUCCgaCGGGUAGUC- -5'
23566 5' -57.1 NC_005261.1 + 4078 0.69 0.66269
Target:  5'- cAGCAGCcccGGGUggcgcCAGGCgcaGCCCAggGGg -3'
miRNA:   3'- -UCGUCG---UCCAa----GUCCGa--CGGGUagUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.