miRNA display CGI


Results 21 - 40 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 5' -57.1 NC_005261.1 + 110955 0.68 0.714127
Target:  5'- gGGCGGUccgGGGgccggcCGGGCUGCCCG-CAc -3'
miRNA:   3'- -UCGUCG---UCCaa----GUCCGACGGGUaGUc -5'
23566 5' -57.1 NC_005261.1 + 109871 0.7 0.600204
Target:  5'- gGGCAGCGGGgcccgCGGGCgggcGCCC--CGGg -3'
miRNA:   3'- -UCGUCGUCCaa---GUCCGa---CGGGuaGUC- -5'
23566 5' -57.1 NC_005261.1 + 108964 0.7 0.569182
Target:  5'- cAGCAGCGGGcccUCcagcGGCggcgGCCCGUCGc -3'
miRNA:   3'- -UCGUCGUCCa--AGu---CCGa---CGGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 108874 0.71 0.518479
Target:  5'- cAGCAGCGGGUggacgaCGGccgcGCUGCCCGcCGGc -3'
miRNA:   3'- -UCGUCGUCCAa-----GUC----CGACGGGUaGUC- -5'
23566 5' -57.1 NC_005261.1 + 107724 0.67 0.773347
Target:  5'- cGCGGCAGGc---GGCUGCgCC-UCGGc -3'
miRNA:   3'- uCGUCGUCCaaguCCGACG-GGuAGUC- -5'
23566 5' -57.1 NC_005261.1 + 107260 0.68 0.683406
Target:  5'- gGGCGcGCGGGcaCGGGCgggcGCgCAUCAGg -3'
miRNA:   3'- -UCGU-CGUCCaaGUCCGa---CGgGUAGUC- -5'
23566 5' -57.1 NC_005261.1 + 107129 0.71 0.538571
Target:  5'- cGGCGGCGGGgccgcCGGGCggcaugggGCCCAgcacgCGGg -3'
miRNA:   3'- -UCGUCGUCCaa---GUCCGa-------CGGGUa----GUC- -5'
23566 5' -57.1 NC_005261.1 + 103804 0.72 0.469663
Target:  5'- cGGCAGCAGGggCAGGCgcggGCCgCGc--- -3'
miRNA:   3'- -UCGUCGUCCaaGUCCGa---CGG-GUaguc -5'
23566 5' -57.1 NC_005261.1 + 101491 0.73 0.405542
Target:  5'- cGCAGCAGGUUCuugAGGUUGgCCAgccCGGc -3'
miRNA:   3'- uCGUCGUCCAAG---UCCGACgGGUa--GUC- -5'
23566 5' -57.1 NC_005261.1 + 99829 0.69 0.610604
Target:  5'- cAGCGGCgAGGggu-GGCUGUgCGUCAGc -3'
miRNA:   3'- -UCGUCG-UCCaaguCCGACGgGUAGUC- -5'
23566 5' -57.1 NC_005261.1 + 99227 0.67 0.773347
Target:  5'- cGCGGCAGGcgCGucGGCgucgcGCCCGcCGGg -3'
miRNA:   3'- uCGUCGUCCaaGU--CCGa----CGGGUaGUC- -5'
23566 5' -57.1 NC_005261.1 + 98199 0.66 0.801322
Target:  5'- cGCGGCGGGcagCGGGCgccGCCaCggCAGc -3'
miRNA:   3'- uCGUCGUCCaa-GUCCGa--CGG-GuaGUC- -5'
23566 5' -57.1 NC_005261.1 + 97702 0.67 0.754027
Target:  5'- gGGCGGUGGGgagacggCGGGUgGCCCGggCGGg -3'
miRNA:   3'- -UCGUCGUCCaa-----GUCCGaCGGGUa-GUC- -5'
23566 5' -57.1 NC_005261.1 + 93383 0.66 0.792143
Target:  5'- gAGCAGgAGGUUgCAGaGCacgcacucGCCCGUCGu -3'
miRNA:   3'- -UCGUCgUCCAA-GUC-CGa-------CGGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 92813 0.74 0.371462
Target:  5'- cGGCGGCGGGcgCAGGC-GCCgCAgCAGg -3'
miRNA:   3'- -UCGUCGUCCaaGUCCGaCGG-GUaGUC- -5'
23566 5' -57.1 NC_005261.1 + 90903 0.71 0.49869
Target:  5'- cGCGGCAGGUcucggCGGcGCUcuuccgcccGCCCAUCAa -3'
miRNA:   3'- uCGUCGUCCAa----GUC-CGA---------CGGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 90783 0.68 0.714127
Target:  5'- cGCaAGCGGGc-CGGGC-GCCUGUCGGa -3'
miRNA:   3'- uCG-UCGUCCaaGUCCGaCGGGUAGUC- -5'
23566 5' -57.1 NC_005261.1 + 90230 0.71 0.518479
Target:  5'- cGCGGCGGG--CGGGC-GCgCCGUCGGg -3'
miRNA:   3'- uCGUCGUCCaaGUCCGaCG-GGUAGUC- -5'
23566 5' -57.1 NC_005261.1 + 88816 0.67 0.754027
Target:  5'- cGGCGGCGGGgcggCGGcGCgcgccgGCCCGgcgUCGGc -3'
miRNA:   3'- -UCGUCGUCCaa--GUC-CGa-----CGGGU---AGUC- -5'
23566 5' -57.1 NC_005261.1 + 88175 0.7 0.579486
Target:  5'- cGGCAGCGGGcuucucgcggCGGcGCUGCaCCGUCGc -3'
miRNA:   3'- -UCGUCGUCCaa--------GUC-CGACG-GGUAGUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.