miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 5' -57.1 NC_005261.1 + 138133 0.66 0.792143
Target:  5'- gGGCGGCGGGgcccggGGGCgcGCCCcgCAc -3'
miRNA:   3'- -UCGUCGUCCaag---UCCGa-CGGGuaGUc -5'
23566 5' -57.1 NC_005261.1 + 136572 0.66 0.801322
Target:  5'- aGGC-GCGGGUgggCGGGCgcagagacGCCCGgcgCAGc -3'
miRNA:   3'- -UCGuCGUCCAa--GUCCGa-------CGGGUa--GUC- -5'
23566 5' -57.1 NC_005261.1 + 131566 0.68 0.693703
Target:  5'- uGGgGGCGGGaagCAGGaaGCCCcaGUCAGg -3'
miRNA:   3'- -UCgUCGUCCaa-GUCCgaCGGG--UAGUC- -5'
23566 5' -57.1 NC_005261.1 + 129733 0.7 0.589829
Target:  5'- cAGCGGCAGGgc--GGCgggGCCCGgccuUCAGc -3'
miRNA:   3'- -UCGUCGUCCaaguCCGa--CGGGU----AGUC- -5'
23566 5' -57.1 NC_005261.1 + 129616 0.73 0.405542
Target:  5'- cGCGGCGGGgUCGGGC-GCCUuugCAGg -3'
miRNA:   3'- uCGUCGUCCaAGUCCGaCGGGua-GUC- -5'
23566 5' -57.1 NC_005261.1 + 128379 0.66 0.801322
Target:  5'- aGGcCGGCuGGggCGGGCUuGCCCcgggCGGg -3'
miRNA:   3'- -UC-GUCGuCCaaGUCCGA-CGGGua--GUC- -5'
23566 5' -57.1 NC_005261.1 + 128322 0.66 0.801322
Target:  5'- aGGcCGGCuGGggCGGGCUuGCCCcgggCGGg -3'
miRNA:   3'- -UC-GUCGuCCaaGUCCGA-CGGGua--GUC- -5'
23566 5' -57.1 NC_005261.1 + 128148 0.66 0.810341
Target:  5'- cGCGGCGGGggUCGGGCgGCUgGaaGGg -3'
miRNA:   3'- uCGUCGUCCa-AGUCCGaCGGgUagUC- -5'
23566 5' -57.1 NC_005261.1 + 128079 0.67 0.773347
Target:  5'- cGCAGguGGggCAgGGCUGgCCGUg-- -3'
miRNA:   3'- uCGUCguCCaaGU-CCGACgGGUAguc -5'
23566 5' -57.1 NC_005261.1 + 127871 0.67 0.734261
Target:  5'- gGGCacgAGCGGGagUCGcgccGGC-GCCCGUCGGg -3'
miRNA:   3'- -UCG---UCGUCCa-AGU----CCGaCGGGUAGUC- -5'
23566 5' -57.1 NC_005261.1 + 126341 0.7 0.544652
Target:  5'- cGCGGCGGGcgcgcgugcgggCGGGCUcGCCCcgCAGc -3'
miRNA:   3'- uCGUCGUCCaa----------GUCCGA-CGGGuaGUC- -5'
23566 5' -57.1 NC_005261.1 + 125638 0.7 0.589829
Target:  5'- cAGCAGCuGGUUgAGGCgGUCCccCAGc -3'
miRNA:   3'- -UCGUCGuCCAAgUCCGaCGGGuaGUC- -5'
23566 5' -57.1 NC_005261.1 + 125412 0.72 0.450798
Target:  5'- gAGCGGCGcGGgcggcgcUCAGGCcGCCCAUCc- -3'
miRNA:   3'- -UCGUCGU-CCa------AGUCCGaCGGGUAGuc -5'
23566 5' -57.1 NC_005261.1 + 123610 1.08 0.001953
Target:  5'- cAGCAGCAGGUUCAGGCUGCCCAUCAGc -3'
miRNA:   3'- -UCGUCGUCCAAGUCCGACGGGUAGUC- -5'
23566 5' -57.1 NC_005261.1 + 123236 0.7 0.579486
Target:  5'- uAGCGGCcgcccAGGcgCGGGCcccGCCCAUCGc -3'
miRNA:   3'- -UCGUCG-----UCCaaGUCCGa--CGGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 121500 0.68 0.703947
Target:  5'- gGGCGGCGGGg-CGGGCauggGgCCGUCGa -3'
miRNA:   3'- -UCGUCGUCCaaGUCCGa---CgGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 121437 0.68 0.703947
Target:  5'- gGGCGGCGGGg-CGGGCauggGgCCGUCGa -3'
miRNA:   3'- -UCGUCGUCCaaGUCCGa---CgGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 114141 0.66 0.827868
Target:  5'- gGGCAgGCGGGggUgggggcuggguGGGCgggGCCCAcUCGGg -3'
miRNA:   3'- -UCGU-CGUCCaaG-----------UCCGa--CGGGU-AGUC- -5'
23566 5' -57.1 NC_005261.1 + 113659 0.66 0.800411
Target:  5'- cGGguGCAGGcaaaUCGGGCUgggaccuggcgccGCCCGgcCAGg -3'
miRNA:   3'- -UCguCGUCCa---AGUCCGA-------------CGGGUa-GUC- -5'
23566 5' -57.1 NC_005261.1 + 112052 0.66 0.827868
Target:  5'- cGGgAGCcGGccUUCGGGCgUGCCCucGUCGGc -3'
miRNA:   3'- -UCgUCGuCC--AAGUCCG-ACGGG--UAGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.